New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2312179	24 (0.900)	4 (0.170)	4/194	1.9	19.6%	coding (54/1551 nt)	bla1	Beta‑lactamase class C
	?	AM260479	= 2312226	11 (0.460)					coding (101/1551 nt)	bla1	Beta‑lactamase class C
Rejected: Frequency below/above cutoff threshold.

CATTCGCCACTCCCCGCCCCCATCGCCTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2312037‑2312179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcggcctgGGCGGATCGTCGTCATCCCCACCGCAGGCGGGCAGGGCAGGGAC  <  AM260479/2312226‑2312183                                                                                                                                                                                             CATTCGCCACTCCCCGCCCCCATCGCCTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTG                                                       <  1:700304/134‑1          CTCCCCGCCCCCATCGCCTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTG                                              >  1:473347/1‑134                          CCTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGGGCGGATCGTCGTCAT                              >  1:691799/1‑134                                                      CCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGGGCGGATCGTCGTCATCCCCACCGCAGGCGGGCAGGGCAGGGAC  <  2:691799/134‑1                                                       CGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCC                                                >  1:693440/1‑87                                                       CGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCC                                                <  2:693440/87‑1                                                                                GAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCC                                                <  1:211374/62‑1                                                                                GAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCC                                                >  2:211374/1‑62                                                                                            GGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGGGCGGATCGTCGTCATCCCCACCGCAGGCGGGCAGGGCAGGG    <  1:317516/94‑1                                                                                            GGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGGGCGGATCGTCGTCATCCCCACCGCAGGCGGGCAGGGCAGGG    >  2:317516/1‑94                                                                                                                                                                                             CATTCGCCACTCCCCGCCCCCATCGCCTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2312037‑2312179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcggcctgGGCGGATCGTCGTCATCCCCACCGCAGGCGGGCAGGGCAGGGAC  <  AM260479/2312226‑2312183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.