New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2312179	24 (0.900)	4 (0.170)	4/194	1.9	19.6%	coding (54/1551 nt)	bla1	Beta‑lactamase class C
	?	AM260479	= 2312226	11 (0.460)					coding (101/1551 nt)	bla1	Beta‑lactamase class C
Rejected: Frequency below/above cutoff threshold.

CTCCCCGCCCCCATCGCCTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCTGATGGC  >  AM260479/2312046‑2312307                                                                                                                                      |                                                                                                                                 cTCCCCGCCCCCATCGCCTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTG                                                                                                                                  >  1:473347‑M1/1‑134 (MQ=255)                gCCTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTccctgccctg                                                                                                                   >  2:459665/1‑134 (MQ=255)                gCCTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTccctgccctg                                                                                                                   >  1:632398/1‑134 (MQ=255)                gCCTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTccctgccctg                                                                                                                   <  1:779599/134‑1 (MQ=255)                 ccTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGggcggatcgtcgtcat                                                                                                                  >  1:691799‑M1/1‑118 (MQ=255)                        tATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTg                                                                                                           <  1:459665/134‑1 (MQ=255)                              tATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTgg                                                                                                     >  1:561446/1‑134 (MQ=255)                                   aaGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCctgct                                                                                                                                <  2:73710/102‑1 (MQ=255)                                   aaGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCctgct                                                                                                                                >  1:73710/1‑102 (MQ=255)                                        cgcgGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCg                                                                                                               >  1:386884/1‑114 (MQ=255)                                        cgcgGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCg                                                                                                               <  2:386884/114‑1 (MQ=255)                                             ccGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGggcggatcgtcgtcatccccaccgcaggcgggcagggcagggac                                                                                      <  2:691799‑M1/134‑45 (MQ=255)                                                     ccTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTg                                                                                                      <  2:969883/110‑1 (MQ=255)                                                     ccTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTg                                                                                                      >  1:969883/1‑110 (MQ=255)                                                                                 gTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATcc                                                       >  1:939518/1‑129 (MQ=255)                                                                                   gggCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGggcggatcgtcgtcatccccaccgcaggcgggcagggcaggg                                                                                        >  2:317516‑M1/1‑52 (MQ=255)                                                                                   gggCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGggcggatcgtcgtcatccccaccgcaggcgggcagggcaggg                                                                                        <  1:317516‑M1/94‑43 (MQ=255)                                                                                        aaCTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTg                                                                                                      >  1:784007/1‑75 (MQ=255)                                                                                        aaCTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTg                                                                                                      <  2:784007/75‑1 (MQ=255)                                                                                                         cGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGtt                                                                <  1:563330/96‑1 (MQ=255)                                                                                                         cGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGtt                                                                >  2:563330/1‑96 (MQ=255)                                                                                                            ttCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCccggt                                                                      <  1:587130/87‑1 (MQ=255)                                                                                                            ttCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCccggt                                                                      >  2:587130/1‑87 (MQ=255)                                                                                                                    aGCCGCGCTGGGCGGCCTGCTGGTCcctgccctgc                                                                                                                  >  2:1000169/1‑35 (MQ=255)                                                                                                                    aGCCGCGCTGGGCGGCCTGCTGGTCcctgccctgc                                                                                                                  <  1:1000169/35‑1 (MQ=255)                                                                                                                         cgcTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGc                                                                                                          >  1:659929/1‑38 (MQ=255)                                                                                                                         cgcTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGc                                                                                                          <  2:659929/38‑1 (MQ=255)                                                                                                                           cTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCt        >  1:290992/1‑134 (MQ=255)                                                                                                                                  gcCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCTGATGGc  >  1:301204/1‑133 (MQ=255)                                                                                                                                      |                                                                                                                                 CTCCCCGCCCCCATCGCCTACAGTATTCCTATCCAAGGGCGCGGCCGACCCGCCTGACCTAAGAACTGCGGAGAACCACCGTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCTGATGGC  >  AM260479/2312046‑2312307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.