New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2312179	24 (0.900)	4 (0.170)	4/194	1.9	19.6%	coding (54/1551 nt)	bla1	Beta‑lactamase class C
	?	AM260479	= 2312226	11 (0.460)					coding (101/1551 nt)	bla1	Beta‑lactamase class C
Rejected: Frequency below/above cutoff threshold.

GTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCTGATGGCCAGTTCCGGCGTGCCGGGCATGGCCGTCGCCGTGGTGCGCGGCAAT  >  AM260479/2312126‑2312353                                                                                                     |                                                                                                                                gTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATcc                                                                                                     >  1:939518/1‑129 (MQ=255)                         cGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGtt                                                                                                              <  1:563330/96‑1 (MQ=255)                         cGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGtt                                                                                                              >  2:563330/1‑96 (MQ=255)                            ttCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCccggt                                                                                                                    <  1:587130/87‑1 (MQ=255)                            ttCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCccggt                                                                                                                    >  2:587130/1‑87 (MQ=255)                                           cTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCt                                                      >  1:290992/1‑134 (MQ=255)                                                  gcCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCTGATGGc                                                >  1:301204/1‑133 (MQ=255)                                                          gTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCcaggccgcccagcgcggctcccaggaaacggcgacgctcttgcagtttgcccacggtggttctccgcagttcttaggtcaggcgggtcgg                                       <  2:691799‑M2/134‑91 (MQ=255)                                                            ccctgccctgCCCGCCTGCGGTGGGGATGACGACGATCCGCCcaggccgcccagcgcggctcccaggaaacggcgacgctcttgcagtttgccc                                                                             <  1:317516‑M2/94‑53 (MQ=255)                                                            ccctgccctgCCCGCCTGCGGTGGGGATGACGACGATCCGCCcaggccgcccagcgcggctcccaggaaacggcgacgctcttgcagtttgccc                                                                             >  2:317516‑M2/1‑42 (MQ=255)                                                                 ccctgcccGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCTGATGGCCAGTTCCGGCGTGcc                                 <  2:939518/133‑1 (MQ=255)                                                                     gcccGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCTGATGGCCAGTTCCGGCGTGCCGGGCa                            >  2:411279/1‑134 (MQ=255)                                                                              cGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCTGATGGCCAGTTCCGGCGTGCCGGGCATGGCCGt                     <  2:301204/132‑1 (MQ=255)                                                                                      aTGACGACGATCCGCCcaggccgcccagcgcggctcccaggaaacggcgacgctcttgcagtttgcccacggtggttctccgcagttcttaggtcaggcgggtcggccgcgcccttggataggaatactgtagg           >  1:691799‑M2/1‑16 (MQ=255)                                                                                               aTCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCTGATGGCCAGTTCTGGCGTGCCGGGCATGGCCGTCGCCGTGGTGCGCGGCAAt  <  2:561446/134‑1 (MQ=255)                                                                                                     |                                                                                                                                GTGGGCAAACTGCAAGAGCGTCGCCGTTTCCTGGGAGCCGCGCTGGGCGGCCTGCTGGTCCCTGCCCTGCCCGCCTGCGGTGGGGATGACGACGATCCGCCCAGGCCGCCCGGTCCGGTTCCCGAATCCCAGATCACCCAGGCCATCGCCCAGATCGACAAGCTGGCCGCTGACCTGATGGCCAGTTCCGGCGTGCCGGGCATGGCCGTCGCCGTGGTGCGCGGCAAT  >  AM260479/2312126‑2312353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.