New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3395698 =	24 (0.900)	7 (0.310)	6/182	1.4	24.8%	coding (138/1059 nt)	holA	DNA polymerase III delta subunit
	?	AM260479	3395714 =	22 (0.970)					coding (122/1059 nt)	holA	DNA polymerase III delta subunit

ATCACGGCATGCAGCTCAAGCTCGACGGGCTCGACGCGCACCTGAGGCAGGCCAAGGCCAAGGGCCTGGCACCGCTGTACGTGGTACATGGCGACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGCGCCGCGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3395843‑3395698 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgcggcgcgcAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGTCGAGCCCGTCGAGCTTGAGCTGCATGCCGTGA  >  AM260479/3395714‑3395842                                                                                                                                                                                                                                                                                     ATCACGGCATGCAGCTCAAGCTCGACGGGCTCGACGCGCACCTGAGGCAGGCCAAGGCCAAGGGCCTGGCACCGCTGTACGTGGTACATGGCGACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGC                                                                                                                                               >  1:655100/1‑134  TCACGGCATGCAGCTCAAGCTCGACGGGCTCGACGCGCACCTGAGGCAGGCCAAGGCCAAGGGCCTGGCACCGCTGTACGTGGTACATGGCGACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGCG                                                                                                                                              >  2:791434/1‑134        CATGCAGCTCAAGCTCGACGGGCTCGACGCGCACCTGAGGCAGGCCAAGGCCAAGGGCCTGGCACCGCTGTACGTGGTACATGGCGACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGCGCCGCGG                                                                                                                                        <  2:655100/134‑1                                                  GGCCAAGGCCAAGGGCCTGGCACCGCTGTACGTGGTACATGGCGACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGT                                                                                              <  2:545753/134‑1                                                                  CTGGCACCGCTGTACGTGGTACATGGCGACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTG                                                                                                   <  1:604324/113‑1                                                                  CTGGCACCGCTGTACGTGGTACATGGCGACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTG                                                                                                   >  2:604324/1‑113                                                                       ACCGCTGTACGTGGTACATGGCGACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAG                                                                                                               >  1:97182/1‑96                                                                       ACCGCTGTACGTGGTACATGGCGACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAG                                                                                                               <  2:97182/96‑1                                                                        CCGCTGTACGTGGTACATGGCGACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGT                                                                                              <  1:220263/112‑1                                                                                              ACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGG                                                                        <  2:220263/112‑1                                                                                                                                       GCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGTCGAGCCCGTCGAGCTTGAGCTGCAT         <  1:666112/134‑1                                                                                                                                              CGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGTCGAGCCCGTCGAGCTTGAGCTGCATGCCGTGA  <  2:536682/134‑1                                                                                                                                                                                                                                                                                     ATCACGGCATGCAGCTCAAGCTCGACGGGCTCGACGCGCACCTGAGGCAGGCCAAGGCCAAGGGCCTGGCACCGCTGTACGTGGTACATGGCGACGAACACCTGCTGGTGCTGGAAGCCGTCGACCGCCTGCGCGCCGCGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3395843‑3395698 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgcggcgcgcAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGTCGAGCCCGTCGAGCTTGAGCTGCATGCCGTGA  >  AM260479/3395714‑3395842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.