New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 3395698 =24 (0.900)7 (0.310) 6/182 1.4 24.8% coding (138/1059 nt) holA DNA polymerase III delta subunit
?AM260479 3395714 = 22 (0.970)coding (122/1059 nt) holA DNA polymerase III delta subunit

CGACGGGATGCGGAGTTCAACGATCTTGCGGTCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGT  >  AM260479/3395569‑3395810
                                                                                                                                 |                                                                                                                
tcacggcatgcagctcaagctcgacgggctcgacgcgcacctgaggcaggccaaggccaagggcctggcaccgctgtacgtggtacatggcgacgaacacctgctggtgctggaagccgtcgaccgcctgcgcg                                                                                                              <  2:536682‑M1/5‑1 (MQ=255)
       atgcagctcaagctcgacgggctcgacgcgcacctgaggcaggccaaggccaagggcctggcaccgctgtacgtggtacatggcgacgaacacctgctggtgctggaagccgtcgaccgcctGCGCGCCgcggc                                                                                                       <  1:666112‑M1/12‑1 (MQ=255)
                        cTTGCGGTCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACgg                                                                                      >  2:393217/1‑134 (MQ=255)
                             ggTCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTc                                                                                  >  2:288203/1‑133 (MQ=255)
                             ggTCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTc                                                                                  >  1:777536/1‑133 (MQ=255)
                               tCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTccag                                                                               >  2:337019/1‑134 (MQ=255)
                                           gACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGgtg                                                                   <  1:874562/134‑1 (MQ=255)
                                             cATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGATCGACGGCt                                                                                    >  1:1049205/1‑115 (MQ=255)
                                             cATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGATCGACGGCt                                                                                    <  2:1049205/115‑1 (MQ=255)
                                                 gACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTtcgt                                                              <  1:492346/133‑1 (MQ=255)
                                                           ccTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGtt                                                                 >  1:483185/1‑120 (MQ=255)
                                                           ccTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGtt                                                                 <  2:483185/120‑1 (MQ=255)
                                                           ccTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTAc                                                    >  1:269893/1‑133 (MQ=255)
                                                            cTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCa                                                  >  1:821278/1‑134 (MQ=255)
                                                             tCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCAc                                                 >  2:735997/1‑134 (MQ=255)
                                                             tCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCAc                                                 >  2:666112/1‑134 (MQ=255)
                                                                      ccgctgtacgtggtacatggcgacgaacacctgctggtgctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTtcgt                                                              <  2:220263‑M1/53‑1 (MQ=255)
                                                                                  aaGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCcctt                            <  2:777536/134‑1 (MQ=255)
                                                                                            acgaacacctgctggtgctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCgg                                        <  1:220263‑M1/75‑1 (MQ=255)
                                                                                            acgaacacctgctggtgctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCttggccttggcc                  <  2:545753‑M1/97‑1 (MQ=255)
                                                                                             ggCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTcgcgc                                                                                                               >  2:546022/1‑40 (MQ=255)
                                                                                             ggCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTcgcgc                                                                                                               <  1:546022/40‑1 (MQ=255)
                                                                                             ggCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCccttggcc                        <  1:78765/127‑1 (MQ=255)
                                                                                             ggCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCccttggcc                        >  2:78765/1‑127 (MQ=255)
                                                                                                 cacctgctggtgctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAg                                  >  2:604324‑M1/33‑113 (MQ=255)
                                                                                                 cacctgctggtgctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAg                                  <  1:604324‑M1/81‑1 (MQ=255)
                                                                                                            gcgcTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGt  <  1:337019/134‑1 (MQ=255)
                                                                                                             ctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGt                                       >  1:97182‑M1/21‑96 (MQ=255)
                                                                                                             ctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGt                                       <  2:97182‑M1/76‑1 (MQ=255)
                                                                                                               cTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGgtg                                                                   >  1:842977/1‑66 (MQ=255)
                                                                                                               cTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGgtg                                                                   <  2:842977/66‑1 (MQ=255)
                                                                                                                             cTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCccttggcc                        <  1:680886/95‑1 (MQ=255)
                                                                                                                             cTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCccttggcc                        >  2:680886/1‑95 (MQ=255)
                                                                                                                                 |                                                                                                                
CGACGGGATGCGGAGTTCAACGATCTTGCGGTCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGT  >  AM260479/3395569‑3395810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.