| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 3395698 = | 24 (0.900) | 7 (0.310) | 6/182 | 1.4 | 24.8% | coding (138/1059 nt) | holA | DNA polymerase III delta subunit |
| ? | AM260479 | 3395714 = | 22 (0.970) | coding (122/1059 nt) | holA | DNA polymerase III delta subunit | |||||
CTTGCGGTCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGTCGAGCCCGTCGAGCTTGAGCTGCATGCCGTGAT > AM260479/3395593‑3395843 | cTTGCGGTCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACgg > 2:393217/1‑134 (MQ=255) ggTCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTc > 2:288203/1‑133 (MQ=255) ggTCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTc > 1:777536/1‑133 (MQ=255) tCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTccag > 2:337019/1‑134 (MQ=255) gACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGgtg < 1:874562/134‑1 (MQ=255) cATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGATCGACGGCt > 1:1049205/1‑115 (MQ=255) cATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGATCGACGGCt < 2:1049205/115‑1 (MQ=255) ggccaaggccaagggcctggcaccgctgtacgtggtacatggcgacgaacacctgctggtgctggaagccgtcgaccgcctgcgcgccgcggcgcgcAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTtcgt < 2:545753‑M2/37‑1 (MQ=255) gACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTtcgt < 1:492346/133‑1 (MQ=255) ccTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGtt < 2:483185/120‑1 (MQ=255) ccTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGtt > 1:483185/1‑120 (MQ=255) ccTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTAc > 1:269893/1‑133 (MQ=255) cTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCa > 1:821278/1‑134 (MQ=255) tCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCAc > 2:666112/1‑134 (MQ=255) tCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCAc > 2:735997/1‑134 (MQ=255) ctggcaccgctgtacgtggtacatggcgacgaacacctgctggtgctggaagccgtcgaccgcctgcgcgccgcggcgcgcAGGCGGTCGACGGCTTCCAGCACCAGCAGgtg < 1:604324‑M2/32‑1 (MQ=255) ctggcaccgctgtacgtggtacatggcgacgaacacctgctggtgctggaagccgtcgaccgcctgcgcgccgcggcgcgcAGGCGGTCGACGGCTTCCAGCACCAGCAGgtg > 2:604324‑M2/82‑113 (MQ=255) accgctgtacgtggtacatggcgacgaacacctgctggtgctggaagccgtcgaccgcctgcgcgccgcggcgcgcAGGCGGTCGACGGCTTccag > 1:97182‑M2/77‑96 (MQ=255) accgctgtacgtggtacatggcgacgaacacctgctggtgctggaagccgtcgaccgcctgcgcgccgcggcgcgcAGGCGGTCGACGGCTTccag < 2:97182‑M2/20‑1 (MQ=255) ccgctgtacgtggtacatggcgacgaacacctgctggtgctggaagccgtcgaccgcctgcgcgccgcggcgcgcAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTtcgt < 1:220263‑M2/37‑1 (MQ=255) ccgctgtacgtggtacatggcgacgaacacctgctggtgctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTtcgt < 2:220263‑M1/53‑1 (MQ=255) aaGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCcctt < 2:777536/134‑1 (MQ=255) acgaacacctgctggtgctggaagccgtcgaccgcctgcgcgccgcggcgcgcAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCgg < 2:220263‑M2/59‑1 (MQ=255) acgaacacctgctggtgctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCgg < 1:220263‑M1/75‑1 (MQ=255) acgaacacctgctggtgctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCttggccttggcc < 2:545753‑M1/97‑1 (MQ=255) ggCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCccttggcc < 1:78765/127‑1 (MQ=255) ggCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCccttggcc > 2:78765/1‑127 (MQ=255) cacctgctggtgctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAg > 2:604324‑M1/33‑113 (MQ=255) cacctgctggtgctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAg < 1:604324‑M1/81‑1 (MQ=255) gcgcTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGt < 1:337019/134‑1 (MQ=255) ctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGt > 1:97182‑M1/21‑96 (MQ=255) ctggaagccgtcgaccgcctGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGt < 2:97182‑M1/76‑1 (MQ=255) cTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGgtg < 2:842977/66‑1 (MQ=255) cTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGgtg > 1:842977/1‑66 (MQ=255) cTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCccttggcc > 2:680886/1‑95 (MQ=255) cTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCccttggcc < 1:680886/95‑1 (MQ=255) gccgcggcgcgcAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGTCGAGCCCGTCGAGCTTGAGCTGCAt < 1:666112‑M2/122‑1 (MQ=255) CCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGTCGAGCCCGTCGAGCTTGAGCTGCATg < 2:655100‑M1/134‑1 (MQ=255) cgcgcAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGTCGAGCCCGTCGAGCTTGAGCTGCATGCCGTGa < 2:536682‑M2/129‑1 (MQ=255) CGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGTCGAGCCCGTCGAGCTTGAGCTGCATGCCGTGa > 2:791434‑M1/1‑134 (MQ=255) GCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGTCGAGCCCGTCGAGCTTGAGCTGCATGCCGTGAt > 1:655100‑M1/1‑134 (MQ=255) | CTTGCGGTCGCCAAAGAGCGACATCGACTGCTGCGCCTCGACTAGCTGGCCCCAGTGGAAGCCGCGCTCGGCCACCAGCACGTCGCGCTCGGAGAAGCCGGCTTCGCGCGCCGCGGCGCGCAGGCGGTCGACGGCTTCCAGCACCAGCAGGTGTTCGTCGCCATGTACCACGTACAGCGGTGCCAGGCCCTTGGCCTTGGCCTGCCTCAGGTGCGCGTCGAGCCCGTCGAGCTTGAGCTGCATGCCGTGAT > AM260479/3395593‑3395843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |