New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 3875155	11 (0.410)	3 (0.120)	3/194	2.2	24.0%	coding (2277/3144 nt)	acrB11	Cation/multidrug efflux pump
	?	AM260479	= 3875215	9 (0.370)					coding (2337/3144 nt)	acrB11	Cation/multidrug efflux pump

CACCACCGGCCAGCCGGTGCCGGCGCTGGACCTGAAAATCGACTACCGCAAGGCCGAGGCCTTCGGCGTCGATGCCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/3875014‑3875155 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcgcgagCTGGTCCGGCTGCATGCGGAACGGCGCGTCGGCCTGCAGGATCACGCGGCGCACGCGGCCCTCGCGCGCGACTTCGTCGATATAGCGCGAGCCCAGCGTGGCCGACAGCGTGTGGTGCACGGTATCGG  <  AM260479/3875215‑3875088                                                                                                                                                                                                                                                                                CACCACCGGCCAGCCGGTGCCGGCGCTGGACCTGAAAATCGACTACCGCAAGGCCGAGGCCTTCGGCGTCGATGCCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCG                                                                                                                                          <  1:1050079/134‑1      CCGGCCAGCCGGTGCCGGCGCTGGACCTGAAAATCGACTACCGCAAGGCCGAGGCCTTCGGCGTCGATGCCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGC                                                                                                                                     <  2:407878/134‑1                                                                         TGCCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGCTGGTCCGGCTGCATGCGGAACGGCGCGTCGGCCTGCAGGATCACGCGGCGCACGCGGCCCTCG                                                                  >  1:994575/1‑134                                                                                               CTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGCTGGTCCGGCTGCATGCGGAACGGCGCGTCGGCCTGCAGGATCACGCGGCGCACGCGGCCCTCGCGCG                                                              <  1:283667/116‑1                                                                                               CTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGCTGGTCCGGCTGCATGCGGAACGGCGCGTCGGCCTGCAGGATCACGCGGCGCACGCGGCCCTCGCGCG                                                              >  2:283667/1‑116                                                                                                                                         CGCGAGCTGGTCCGGCTGCATGCGGAACGGCGCGTCGGCCTGCAGGATCACGCGGCGCACGCGGCCCTCGCGCGCGACTTCGTCGATATAGCGCGAGCCCAGCGTGGCCGACAGCGTGTGGTGCACGGTATCGG  >  1:508801/1‑134                                                                                                                                                                                                                                                                                CACCACCGGCCAGCCGGTGCCGGCGCTGGACCTGAAAATCGACTACCGCAAGGCCGAGGCCTTCGGCGTCGATGCCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/3875014‑3875155 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcgcgagCTGGTCCGGCTGCATGCGGAACGGCGCGTCGGCCTGCAGGATCACGCGGCGCACGCGGCCCTCGCGCGCGACTTCGTCGATATAGCGCGAGCCCAGCGTGGCCGACAGCGTGTGGTGCACGGTATCGG  <  AM260479/3875215‑3875088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.