New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 3875155	11 (0.410)	3 (0.120)	3/194	2.2	24.0%	coding (2277/3144 nt)	acrB11	Cation/multidrug efflux pump
	?	AM260479	= 3875215	9 (0.370)					coding (2337/3144 nt)	acrB11	Cation/multidrug efflux pump

CCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTGGAATGGGGGCGCGGCGAGGTCACGCTGGAGCGCTTCGACGGCTTC  >  AM260479/3875088‑3875326                                                                                                                                |                                                                                                                ccGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGctcgcg                                                                                                           >  1:508801‑M2/1‑128 (MQ=255)              ccacACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTgc                                                                                              >  2:337031/1‑134 (MQ=255)                                                             cgcgcgAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGctcgcgcgcgacttcgtcgatatagcgcgagcccagcgtggccgacag                                                                 <  1:283667‑M2/116‑49 (MQ=255)                                                             cgcgcgAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGctcgcgcgcgacttcgtcgatatagcgcgagcccagcgtggccgacag                                                                 >  2:283667‑M2/1‑68 (MQ=255)                                                              gcgcgAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTg                                               >  1:488384/1‑133 (MQ=255)                                                                 cgAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGctcgcgcgcgacttcgtcgatatagcgcgagcccagcgtggccgacagcgtgtggtgcacggtatcggca                                           >  1:994575‑M2/1‑64 (MQ=255)                                                                       ccGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTGGAATGGGGgc                                     <  1:337031/134‑1 (MQ=255)                                                                                                 ccGACGCGCCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTGGAATGGGGGCGCGGCGAGGTCACGCTGGAGCGCTTc           >  2:878770/1‑134 (MQ=255)                                                                                                 ccGACGCGCCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTGGAATGGGGGCGCGGCGAGGTCACGCTGGAGCGCTTc           >  2:960682/1‑134 (MQ=255)                                                                                                      gcgcCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTGGAATGGGGGCGCGGCGAGGTCACGCTGGAGCGCTTCGACgg      >  1:1057134/1‑134 (MQ=255)                                                                                                          cGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTGGAATGGGGGCGCGGCGAGGTCACGCTGGAGCGCTTCGACGGCTTc  <  2:136595/134‑1 (MQ=255)                                                                                                                           gACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTGGAATGGGGGCGCGGCGAGGTCACGCTGGAGCGCt             <  1:15384/106‑1 (MQ=255)                                                                                                                           gACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTGGAATGGGGGCGCGGCGAGGTCACGCTGGAGCGCt             >  2:15384/1‑106 (MQ=255)                                                                                                                                |                                                                                                                CCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTGGAATGGGGGCGCGGCGAGGTCACGCTGGAGCGCTTCGACGGCTTC  >  AM260479/3875088‑3875326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.