| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 3875155 | 11 (0.410) | 3 (0.120) | 3/194 | 2.2 | 24.0% | coding (2277/3144 nt) | acrB11 | Cation/multidrug efflux pump |
| ? | AM260479 | = 3875215 | 9 (0.370) | coding (2337/3144 nt) | acrB11 | Cation/multidrug efflux pump | |||||
CCTGAAAATCGACTACCGCAAGGCCGAGGCCTTCGGCGTCGATGCCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTGGAAT > AM260479/3875044‑3875285 | ccTGAAAATCGACTACCGCAAGGCCGAGGCCTTCGGCGTCGATGCCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTGCGCCGCGTGATcc < 1:361849/134‑1 (MQ=255) tGCCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGctggtccggctgcatgcggaacggcgcgtcggcctgcaggatcacgcggcgcacgcggccctcg > 1:994575‑M1/1‑70 (MQ=255) gCCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCcgcg > 1:386713/1‑76 (MQ=255) gCCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCcgcg < 2:386713/76‑1 (MQ=255) ccGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGctcgcg > 1:508801‑M2/1‑128 (MQ=255) ccacACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTgc > 2:337031/1‑134 (MQ=255) cTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGctggtccggctgcatgcggaacggcgcgtcggcctgcaggatcacgcggcgcacgcggccctcgcgcg < 1:283667‑M1/116‑69 (MQ=255) cTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGctggtccggctgcatgcggaacggcgcgtcggcctgcaggatcacgcggcgcacgcggccctcgcgcg > 2:283667‑M1/1‑48 (MQ=255) cTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTgcgc < 2:427117/60‑1 (MQ=255) cTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTgcgc > 1:427117/1‑60 (MQ=255) cTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCAt > 1:894262/1‑95 (MQ=255) cTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCAt < 2:894262/95‑1 (MQ=255) cgcgcgAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTcc > 2:320389/1‑51 (MQ=255) cgcgcgAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTcc < 1:320389/51‑1 (MQ=255) cgcgcgAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGctcgcgcgcgacttcgtcgatatagcgcgagcccagcgtggccgacag > 2:283667‑M2/1‑68 (MQ=255) cgcgcgAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGctcgcgcgcgacttcgtcgatatagcgcgagcccagcgtggccgacag < 1:283667‑M2/116‑49 (MQ=255) gcgcgAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTg > 1:488384/1‑133 (MQ=255) cgcgAGctggtccggctgcatgcggaacggcgcgtcggcctgcaggatcacgcggcgcacgcggccctcgcgcgcgacttcgtcgatatagcgcgagcccagcgtggccgacagcgtgtggtgcacggtatcgg > 1:508801‑M1/1‑6 (MQ=255) cgAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGctcgcgcgcgacttcgtcgatatagcgcgagcccagcgtggccgacagcgtgtggtgcacggtatcggca > 1:994575‑M2/1‑64 (MQ=255) | CCTGAAAATCGACTACCGCAAGGCCGAGGCCTTCGGCGTCGATGCCGATACCGTGCACCACACGCTGTCGGCCACGCTGGGCTCGCGCTATATCGACGAAGTCGCGCGCGAGGGCCGCGTGCGCCGCGTGATCCTGCAGGCCGACGCGCCGTTCCGCATGCAGCCGGACCAGCTCGCGCGCGTGCACGTGCGCAACGCACAGGGCGCGATGGTGTCGCTGGCCGCGTTCGCCTCGCTGGAAT > AM260479/3875044‑3875285 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |