New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 2652271	35 (1.190)	4 (0.150)	4/196	2.1	10.4%	coding (1131/1194 nt)	h16_B2343	conserved hypothetical protein
	?	AM260480	= 2652302	37 (1.370)					coding (1100/1194 nt)	h16_B2343	conserved hypothetical protein
Rejected: Frequency below/above cutoff threshold.

GCCCGGCAGCCTGGTTTGCGGGCTGATCAGGGTGCCGGCAATGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/2652132‑2652271 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgccggACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCTGGTCCGTTGACCAAATACGCACGACTGGAGCCTGATTCCGATGGCAACGCATGAAGACCTGCTGCAGATAGAAAGCGAAGGCGGCACCA  <  AM260480/2652302‑2652173                                                                                                                                                                                                                                                                                GCCCGGCAGCCTGGTTTGCGGGCTGATCAGGGTGCCGGCAATGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCG                                                                                                                                          >  2:98905/1‑134    CGGCAGCCTGGTTTGCGGGCTGATCAGGGTGCCGGCAATGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGC                                                                                                                                       >  1:769303/1‑134                                               CCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACG                                                                                             <  2:1049705/133‑1                                                                             TCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACC                                                                                                   >  2:56083/1‑97                                                                             TCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACC                                                                                                   <  1:56083/97‑1                                                                             TCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGG                                                                                                                                    <  2:681107/64‑1                                                                             TCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGG                                                                                                                                    >  1:681107/1‑64                                                                             TCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGC                                                                                                                                       <  1:556868/61‑1                                                                             TCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGC                                                                                                                                       >  2:556868/1‑61                                                                                        CATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAG                                                                                                                                            >  1:416294/1‑45                                                                                        CATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAG                                                                                                                                            <  2:416294/45‑1                                                                                                                                 CCAGCGTGCCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCTGGTCCGTTGACCAAATACGCACGACTGGAGCCTGATTCCGATGGCAACGCATGAAGACCTGCTGCAGATAGAAAGCGAAGG          >  1:545215/1‑134                                                                                                                                    GCGTGCCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCTGGTCCGTTGACCAAATACGCACGACTGGAGCCTGATTCCGATGGCAACGCATGAAGACCTGCTGCAGATAGAAAGCGAAGGCGG       >  1:617560/1‑134                                                                                                                                     CGTGCCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCTGGTCCGTTGACCAAATACGCACGACTGGAGCCTGATTCCGATGGCAACGCATGAAGACCTGCTGCAGATAGAAAGCGAAGGCGG       >  2:161916/1‑133                                                                                                                                     CGTGCCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCTGGTCCGTTGACCAAATACGCACGACTGGAGCCTGATTCCGATGGCAACGCATGAAGACCTGCTGCAGATAGAAAGCGAAGGCGG       >  2:433387/1‑133                                                                                                                                     CGTGCCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCTGGTCCGTTGACCAAATACGCACGACTGGAGCCTGATTCCGATGGCAACGCATGAAGACCTGCTGCAGATAGAAAGCGAAGGCGG       >  2:769303/1‑133                                                                                                                                      GTGCCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCTGGTCCGTTGACCAAATACGCACGACTGGAGCCTGATTCCGATGGCAACGCATGAAGACCTGCTGCAGATAGAAAGCGAAGGCGGCA     <  2:238464/134‑1                                                                                                                                      GTGCCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCTGGTCCGTTGACCAAATACGCACGACTGGAGCCTGATTCCGATGGCAACG                                          <  2:194507/97‑1                                                                                                                                      GTGCCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCTGGTCCGTTGACCAAATACGCACGACTGGAGCCTGATTCCGATGGCAACG                                          >  1:194507/1‑97                                                                                                                                         CCGGACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCTGGTCCGTTGACCAAATACGCACGACTGGAGCCTGATTCCGATGGCAACGCATGAAGACCTGCTGCAGATAGAAAGCGAAGGCGGCACCA  <  1:44967/134‑1                                                                                                                                                                                                                                                                                GCCCGGCAGCCTGGTTTGCGGGCTGATCAGGGTGCCGGCAATGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/2652132‑2652271 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgccggACGACGCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCTGGTCCGTTGACCAAATACGCACGACTGGAGCCTGATTCCGATGGCAACGCATGAAGACCTGCTGCAGATAGAAAGCGAAGGCGGCACCA  <  AM260480/2652302‑2652173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.