| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | = 2652271 | 35 (1.190) | 4 (0.150) | 4/196 | 2.1 | 10.4% | coding (1131/1194 nt) | h16_B2343 | conserved hypothetical protein |
| ? | AM260480 | = 2652302 | 37 (1.370) | coding (1100/1194 nt) | h16_B2343 | conserved hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTTGCGGGCTGATCAGGGTGCCGGCAATGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCG > AM260480/2652145‑2652403 | gTTTGCGGGCTGATCAGGGTGCCGGCAATGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGtcttc < 2:847371/132‑1 (MQ=255) cGGGCTGATCAGGGTGCCGGCAATGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTg > 2:617560/1‑133 (MQ=255) gggTGCCGGCAATGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAt‑ctc < 2:644835/134‑1 (MQ=255) gTGCCGGCAATGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCgg < 1:712998/134‑1 (MQ=255) tGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccgg < 1:44967‑M2/134‑5 (MQ=255) tGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAt‑ctc < 1:492030/119‑1 (MQ=255) tGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAt‑ctc > 2:492030/1‑119 (MQ=255) tGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcac < 2:238464‑M2/134‑8 (MQ=255) ccgccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGacgacgccgagatctacttccagggagaagaccggcacg < 2:1049705‑M1/133‑40 (MQ=255) ccgccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacgc > 1:617560‑M2/1‑125 (MQ=255) ccgccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacg > 2:161916‑M2/1‑125 (MQ=255) ccgccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacg > 2:433387‑M2/1‑125 (MQ=255) ccgccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacg > 2:769303‑M2/1‑125 (MQ=255) gccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgc < 2:712591/134‑1 (MQ=255) ccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacgctgg > 1:545215‑M2/1‑122 (MQ=255) cTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac < 2:915868/134‑1 (MQ=255) cTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac < 1:582021/134‑1 (MQ=255) cGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcacgc < 1:21351/133‑1 (MQ=255) tCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTg < 1:305686/133‑1 (MQ=255) gcagGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac > 2:527699/1‑116 (MQ=255) gcagGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac < 1:527699/116‑1 (MQ=255) tCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGacgacgccgagatctacttccagggagaagacc < 1:56083‑M1/97‑34 (MQ=255) tCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGacgacgccgagatctacttccagggagaagacc > 2:56083‑M1/1‑64 (MQ=255) tCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGG < 2:681107‑M1/64‑1 (MQ=255) tCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGG > 1:681107‑M1/1‑64 (MQ=255) cGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcac > 1:194507‑M2/1‑90 (MQ=255) cGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcac < 2:194507‑M2/97‑8 (MQ=255) ccATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGccacca < 1:645831/133‑1 (MQ=255) cATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCAcg < 1:238464/134‑1 (MQ=255) cATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGACGAC‑GCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCAcg > 2:387357/1‑134 (MQ=9) tCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCAcgcg > 2:1078022/1‑134 (MQ=255) aaTCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGggcg > 1:332346/1‑134 (MQ=255) ggCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGggcgcggcg > 1:909316/1‑134 (MQ=255) ccAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAg < 1:540383/56‑1 (MQ=255) ccAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAg > 2:540383/1‑56 (MQ=255) cGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac > 1:399227/1‑77 (MQ=255) cGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac < 2:399227/77‑1 (MQ=255) tATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCgcgcag > 1:735397/1‑134 (MQ=255) gTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCgcagcgcagc < 2:909316/134‑1 (MQ=255) aCGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTc > 2:364225/1‑79 (MQ=255) aCGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTc < 1:364225/79‑1 (MQ=255) cGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAgcg < 1:98905/134‑1 (MQ=255) gtgcgCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCgcagcgcagc < 1:117653/122‑1 (MQ=255) gtgcgCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCgcagcgcagc > 2:117653/5‑126 (MQ=255) aCCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGcgccg > 2:841783/1‑134 (MQ=255) ccAGCGTGCCGGacgacgccgagatctacttccagggagaagaccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatgaagacctgctgcagatagaaagcgaagg > 1:545215‑M1/1‑12 (MQ=255) ccAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGcgccgc > 1:702117/1‑134 (MQ=255) gCGTGCCGGacgacgccgagatctacttccagggagaagaccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatgaagacctgctgcagatagaaagcgaaggcgg > 1:617560‑M1/1‑9 (MQ=255) cGTGCCGGacgacgccgagatctacttccagggagaagaccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatgaagacctgctgcagatagaaagcgaaggcgg > 2:769303‑M1/1‑8 (MQ=255) cGTGCCGGacgacgccgagatctacttccagggagaagaccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatgaagacctgctgcagatagaaagcgaaggcgg > 2:433387‑M1/1‑8 (MQ=255) cGTGCCGGacgacgccgagatctacttccagggagaagaccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatgaagacctgctgcagatagaaagcgaaggcgg > 2:161916‑M1/1‑8 (MQ=255) cGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatgaagacctgctgcagatagaaagcgaaggcgg < 2:1049705‑M2/133‑95 (MQ=255) cGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCgcgcagcgcc > 1:841805/1‑118 (MQ=255) cGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCgcgcagcgcc < 2:841805/119‑2 (MQ=255) gTGCCGGacgacgccgagatctacttccagggagaagaccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatgaagacctgctgcagatagaaagcgaaggcggca < 2:238464‑M1/134‑128 (MQ=255) gTGCCGGacgacgccgagatctacttccagggagaagaccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacg > 1:194507‑M1/1‑7 (MQ=255) gTGCCGGacgacgccgagatctacttccagggagaagaccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacg < 2:194507‑M1/97‑91 (MQ=255) ccGGacgacgccgagatctacttccagggagaagaccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatgaagacctgctgcagatagaaagcgaaggcggcacca < 1:44967‑M1/134‑131 (MQ=255) ggTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatga > 2:56083‑M2/1‑33 (MQ=255) ggTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatga < 1:56083‑M2/97‑65 (MQ=255) ggTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGgcg > 1:815393/1‑134 (MQ=255) | GTTTGCGGGCTGATCAGGGTGCCGGCAATGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCG > AM260480/2652145‑2652403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |