New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 2652271	35 (1.190)	4 (0.150)	4/196	2.1	10.4%	coding (1131/1194 nt)	h16_B2343	conserved hypothetical protein
	?	AM260480	= 2652302	37 (1.370)					coding (1100/1194 nt)	h16_B2343	conserved hypothetical protein
Rejected: Frequency below/above cutoff threshold.

TGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCGCCGGTCGCGCCGCCCACCCGCC  >  AM260480/2652173‑2652425                                                                                                                                   |                                                                                                                            tGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccgg                                                                                                                         <  1:44967‑M2/134‑5 (MQ=255)    tGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcac                                                                                                                      <  2:238464‑M2/134‑8 (MQ=255)      ccgccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacgc                                                                                                                    >  1:617560‑M2/1‑125 (MQ=255)      ccgccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacg                                                                                                                     >  2:769303‑M2/1‑125 (MQ=255)      ccgccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacg                                                                                                                     >  2:433387‑M2/1‑125 (MQ=255)      ccgccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacg                                                                                                                     >  2:161916‑M2/1‑125 (MQ=255)        gccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgc                                                                                                                  <  2:712591/134‑1 (MQ=255)         ccTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacgctgg                                                                                                                 >  1:545215‑M2/1‑122 (MQ=255)          cTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac                                                                                                                <  2:915868/134‑1 (MQ=255)          cTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac                                                                                                                <  1:582021/134‑1 (MQ=255)             cGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcacgc                                                                                                              <  1:21351/133‑1 (MQ=255)                  tCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTg                                                                                                         <  1:305686/133‑1 (MQ=255)                            gcagGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac                                                                                                                >  2:527699/1‑116 (MQ=255)                            gcagGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac                                                                                                                <  1:527699/116‑1 (MQ=255)                                         cGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcac                                                                                                                      >  1:194507‑M2/1‑90 (MQ=255)                                         cGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcac                                                                                                                      <  2:194507‑M2/97‑8 (MQ=255)                                              ccATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGccacca                                                                             <  1:645831/133‑1 (MQ=255)                                               cATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCAcg                                                                           <  1:238464/134‑1 (MQ=255)                                               cATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGACGAC‑GCCGAGATCTACTTCCAGGGAGAAGACCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCAcg                                                                           >  2:387357/1‑134 (MQ=9)                                                 tCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCAcgcg                                                                         >  2:1078022/1‑134 (MQ=255)                                                     aaTCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGggcg                                                                     >  1:332346/1‑134 (MQ=255)                                                          ggCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGggcgcggcg                                                                >  1:909316/1‑134 (MQ=255)                                                                   cGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac                                                                                                                <  2:399227/77‑1 (MQ=255)                                                                   cGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGgcacgcgcac                                                                                                                >  1:399227/1‑77 (MQ=255)                                                                         tATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCgcgcag                                                 >  1:735397/1‑134 (MQ=255)                                                                               gTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCgcagcgcagc                                           <  2:909316/134‑1 (MQ=255)                                                                                   aCGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTc                                                                                              >  2:364225/1‑79 (MQ=255)                                                                                   aCGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTc                                                                                              <  1:364225/79‑1 (MQ=255)                                                                                    cGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAgcg                                      <  1:98905/134‑1 (MQ=255)                                                                                       gtgcgCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCgcagcgcagc                                           <  1:117653/122‑1 (MQ=255)                                                                                       gtgcgCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCgcagcgcagc                                           >  2:117653/5‑126 (MQ=255)                                                                                       aCCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGcgccg                                   >  2:841783/1‑134 (MQ=255)                                                                                        ccAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGcgccgc                                  >  1:702117/1‑134 (MQ=255)                                                                                            cGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatgaagacctgctgcagatagaaagcgaaggcgg                               <  2:1049705‑M2/133‑95 (MQ=255)                                                                                            cGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCgcgcagcgcc                                             <  2:841805/119‑2 (MQ=255)                                                                                            cGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCgcgcagcgcc                                             >  1:841805/1‑118 (MQ=255)                                                                                                  ggTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatga                                                             <  1:56083‑M2/97‑65 (MQ=255)                                                                                                  ggTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTccggcacgctggtccgttgaccaaatacgcacgactggagcctgattccgatggcaacgcatga                                                             >  2:56083‑M2/1‑33 (MQ=255)                                                                                                  ggTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGgcg                        >  1:815393/1‑134 (MQ=255)                                                                                                    tcttctCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCGcc                      >  1:731486/1‑134 (MQ=255)                                                                                                          cccTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGggcgcggcg                                                                <  1:377125/86‑1 (MQ=255)                                                                                                          cccTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGggcgcggcg                                                                >  2:377125/1‑86 (MQ=255)                                                                                                          cccTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCGCCGGTcgc                >  2:705962/1‑134 (MQ=255)                                                                                                               gAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCGCCGGTCGcgccg            <  2:815393/133‑1 (MQ=255)                                                                                                               gAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCGCCGGTCGcgccg            <  1:841783/133‑1 (MQ=255)                                                                                                                      aT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCGCCGGTCGCGCCGCCCACCCg    >  1:90271/1‑134 (MQ=255)                                                                                                                            ggCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCGCCGGTCGCGCCGCCCACCCGcc  <  2:702117/131‑1 (MQ=255)                                                                                                                            ggCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCGCCGGTCGCGCCGCCCACCCGcc  <  2:44967/131‑1 (MQ=255)                                                                                                                            ggCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCGCCGGTCGCGCCGCCCACCCGcc  <  2:90271/131‑1 (MQ=255)                                                                                                                                   |                                                                                                                            TGGTGCCGCCTTCGCTTTCTATCTGCAGCAGGTCTTCATGCGTTGCCATCGGAATCAGGCTCCAGTCGTGCGTATTTGGTCAACGGACCAGCGTGCCGGTCTTCTCCCTGGAAGTAGAT‑CTCGGCGTCGTCCGGCACGCGCACGCCCTTGCCATAGACCTCGCGCGTGGCAGCCACCACGCGGGCGCGGCGCGGATCCTCGCGCAGCGCAGCCAGCGCCGCCAGTTCGGCGCCGGTCGCGCCGCCCACCCGCC  >  AM260480/2652173‑2652425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.