| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 332818 = | 28 (1.110) | 6 (0.250) | 5/190 | 1.6 | 20.7% | coding (1126/1710 nt) | nagE | Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC, N‑acetylglucosamine‑specific |
| ? | AM260479 | 332850 = | 20 (0.850) | coding (1158/1710 nt) | nagE | Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC, N‑acetylglucosamine‑specific | |||||
CGATGTCGGCCACGTTCAGCCGCAGACGCGTGGTGCAGGCATCGACCACGACCAGGTTGGCAGGGCCGCCCAGCGCTTCGACATACTGTTGCGCCACGCTGCCCGCGGCCGGCTGCGCGGCACCGCCGGCGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/332953‑332818‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccgcGGGCAGCGTGGCGCAACAGTATGTCGAAGCGCTGGGCGGCCCTGCCAACCTGGTCGTGGTCGATGCCTGCACCACGCGTCTGCGGCTGAACGTGGCCGACATCGGCGCGGTGTCCGAGCCGCGGCTCAAG > AM260479/332850‑332979 CGATGTCGGCCACGTTCAGCCGCAGACGCGTGGTGCAGGCATCGACCACGACCAGGTTGGCAGGGCCGCCCAGCGCTTCGACATACTGTTGCGCCACGCTGCCCGCGGCCGGCTGCGCGGCACCGCCGGCGGCC < 1:676213/134‑1 GTCGGCCACGTTCAGCCGCAGACGCGTGGTGCAGGCATCGACCACGACCAGGTTGGCAGGGCCGCCCAGCGCTTCGACATACTGTTGCGCCACGCTGCCCGCGGCCGGCTGCGCGGCACCGCCGGCGGCCGCGG > 1:610449/1‑134 GGCCACGTTCAGCCGCAGACGCGTGGTGCAGGCATCGACCACGACCAGGTTGGCAGGGCCGCCCAGCGCTTCGACATACTGTTGCGCCACGCTGCCCGCGGCCGGCTGCGCGGCACCGCCGGCGGCCGCGGGC < 2:610449/133‑1 ACGACCAGGTTGGCAGGGCCGCCCAGCGCTTCGACATACTGTTGCGCCACGCTGCCCGCGGCCGGCTGCGCGGCACCGCCGGC > 1:973639/1‑83 ACGACCAGGTTGGCAGGGCCGCCCAGCGCTTCGACATACTGTTGCGCCACGCTGCCCGCGGCCGGCTGCGCGGCACCGCCGGC < 2:973639/83‑1 GCAGGGCCGCCCAGCGCTTCGACATACTGTTGCGCCACGCTGCCCGCGGCCGGCTGCGCGGCACCGCCGGCGGC < 1:270122/74‑1 GCAGGGCCGCCCAGCGCTTCGACATACTGTTGCGCCACGCTGCCCGCGGCCGGCTGCGCGGCACCGCCGGCGGC > 2:270122/1‑74 ggccGCCGGCTGCGCGGCACCGC‑‑‑CGGCCGCGGGCAGCGTGGCGCAACAGTATGTCGAAGCGCTGGGCGGCCCTGCCAACCTGGTCGTGGTCGATGCCTGCACCA < 1:653549/100‑1 ggccGCCGGCTGCGCGGCACCGC‑‑‑CGGCCGCGGGCAGCGTGGCGCAACAGTATGTCGAAGCGCTGGGCGGCCCTGCCAACCTGGTCGTGGTCGATGCCTGCACCA > 2:653549/5‑104 CGGCCGGCTGCGCGGCACCGCCGGCGGCCGCGGGCAGCGTGGCGCAACAGTAT > 1:876507/1‑53 CGGCCGGCTGCGCGGCACCGCCGGCGGCCGCGGGCAGCGTGGCGCAACAGTAT < 2:876507/53‑1 CGGCCGCGGGCAGCGTGGCGCAACAGTATGTCGAAGCGCTGGGCGGCCCTGCCAACCTGGTCGTGGTCGATGCCTGCA < 1:401089/78‑1 CGGCCGCGGGCAGCGTGGCGCAACAGTATGTCGAAGCGCTGGGCGGCCCTGCCAACCTGGTCGTGGTCGATGCCTGCA > 2:401089/1‑78 GCCGCGGGCAGCGTGGCGCAACAGTATGTCGAAGCGCTGGGCGGCCCTGCCAACCTGGTCGTGGTCGATGCCTGCACCACGCGTCTGCGGCTGAACGTGGCCGACATCGGCGCGGTGTCCGAGCCGCGGCTCAA < 2:511931/134‑1 CCGCGGGCAGCGTGGCGCAACAGTATGTCGAAGCGCTGGGCGGCCCTGCCAACCTGGTCGTGGTCGATGCCTGCACCACGCGTCTGCGGCTGAACGTGGCCGACATCGGCGCGGTGTCCGAGCCGCGGCTCAAG < 2:676213/134‑1 CGATGTCGGCCACGTTCAGCCGCAGACGCGTGGTGCAGGCATCGACCACGACCAGGTTGGCAGGGCCGCCCAGCGCTTCGACATACTGTTGCGCCACGCTGCCCGCGGCCGGCTGCGCGGCACCGCCGGCGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/332953‑332818‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccgcGGGCAGCGTGGCGCAACAGTATGTCGAAGCGCTGGGCGGCCCTGCCAACCTGGTCGTGGTCGATGCCTGCACCACGCGTCTGCGGCTGAACGTGGCCGACATCGGCGCGGTGTCCGAGCCGCGGCTCAAG > AM260479/332850‑332979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |