| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 1475922 | 13 (0.510) | 4 (0.170) | 4/190 | 1.8 | 24.9% | coding (820/939 nt) | h16_A1362 | transcriptional regulator, LysR‑family |
| ? | AM260479 | = 1475944 | 12 (0.510) | coding (842/939 nt) | h16_A1362 | transcriptional regulator, LysR‑family | |||||
AACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/1475853‑1475922‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaccAGCGTCAGCGTCTGGCCCTGCAGGTGGCGGTCGCGCAGTGGCACGTAGACCAGCGCCTGGCGGGCGCGCTCTTCCATCACATCGAGCGGGTTCAGCAGCGCGATGCCGGTGCCCAGCATC < AM260479/1475944‑1475825 AACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCA < 1:866526/68‑1AACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCA > 2:866526/1‑68 TGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCAGCGTCAGCGTCTGGCCCTGCA > 1:565610/1‑81 TGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCAGCGTCAGCGTCTGGCCCTGCA < 2:565610/81‑1 GCGCGACCGCCACCAGCGTCAGCGTCTGGCCCTGCAGGTGGCGGTCGCGCAGTGGCACGTAGACCAGCGCCTGGCGGGCGCGCTCTTCCATCACA > 1:241966/1‑95 GCGCGACCGCCACCAGCGTCAGCGTCTGGCCCTGCAGGTGGCGGTCGCGCAGTGGCACGTAGACCAGCGCCTGGCGGGCGCGCTCTTCCATCACA < 2:241966/95‑1 CCACCAGCGTCAGCGTCTGGCCCTGCAGGTGGCGGTCGCGCAGTGGCACGTAGACCAGCGCCTGGCGGGCGCGCTCTTCCATCACATCGAGCGGGTTCAGCAGCGCGATGCCGGTGCCCAGCATC > 1:42392/1‑125 CCACCAGCGTCAGCGTCTGGCCCTGCAGGTGGCGGTCGCGCAGTGGCACGTAGACCAGCGCCTGGCGGGCGCGCTCTTCCATCACATCGAGCGGGTTCAGCAGCGCGATGCCGGTGCCCAGCATC < 2:42392/125‑1 AACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/1475853‑1475922‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaccAGCGTCAGCGTCTGGCCCTGCAGGTGGCGGTCGCGCAGTGGCACGTAGACCAGCGCCTGGCGGGCGCGCTCTTCCATCACATCGAGCGGGTTCAGCAGCGCGATGCCGGTGCCCAGCATC < AM260479/1475944‑1475825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |