| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 1475922 | 13 (0.510) | 4 (0.170) | 4/190 | 1.8 | 24.9% | coding (820/939 nt) | h16_A1362 | transcriptional regulator, LysR‑family |
| ? | AM260479 | = 1475944 | 12 (0.510) | coding (842/939 nt) | h16_A1362 | transcriptional regulator, LysR‑family | |||||
CTGGTGATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCTGATGGCCGAGCGCATCGGCGACGCGCTGGCGGTCTTGTTCGCGCAGGCGCGCTGAGCAACAGGGTGTCGCAGGTGTCCACTTTTTGTGGA > AM260479/1475820‑1476076 | cTGGTGATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGgcgcg > 2:104719/1‑134 (MQ=255) gATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTggtgg < 2:42392‑M2/125‑6 (MQ=255) gATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTggtgg > 1:42392‑M2/1‑120 (MQ=255) aTGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTcg < 1:848782/134‑1 (MQ=255) gcgcTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGcgccgc < 1:104719/134‑1 (MQ=255) aCCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCt > 1:181004/1‑133 (MQ=255) tgtgATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTggtggcggtcgcgc < 2:241966‑M2/95‑15 (MQ=255) tgtgATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTggtggcggtcgcgc > 1:241966‑M2/1‑81 (MQ=255) tgtgATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCTGATGGCCGAgc > 2:274295/1‑134 (MQ=255) cgccAGGCGCTGGTCTACGTGCCACTGCGCGACCGCTACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCTGATGGCCGAGCGCATCGGCGACGCGCTGGc > 2:396688/1‑134 (MQ=255) cgACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGcgccgc < 1:464563/66‑1 (MQ=255) cgACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGcgccgc > 2:464563/1‑66 (MQ=255) cgACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCg < 1:362761/71‑1 (MQ=255) cgACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCg > 2:362761/1‑71 (MQ=255) tGCAGGGCCAGACGCTGACGCTggtggcggtcgcgcagtggcacgtagaccagcgcctggcgggcgcgctcttccatcaca > 1:565610‑M2/1‑22 (MQ=255) tGCAGGGCCAGACGCTGACGCTggtggcggtcgcgcagtggcacgtagaccagcgcctggcgggcgcgctcttccatcaca < 2:565610‑M2/81‑60 (MQ=255) ctgacgctgGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCTGATGGCCGAGCGCATCGGCGACGCGCTGGCGGTCTTGTTCGCGCAGGCGCGCTGAGCAACAGGGTGTCGCAGGTGTCCACtttt > 2:956361/1‑134 (MQ=255) ctgGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCTGATGGCCGAGCGCATCGGCGACGCGCTGGCGGTCTTGTTCGCGCAGGCGCGCTGAGCAACAGGGTGTCGCAGGTGTCCACTTTTTGTGGa < 1:396688/134‑1 (MQ=255) | CTGGTGATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCTGATGGCCGAGCGCATCGGCGACGCGCTGGCGGTCTTGTTCGCGCAGGCGCGCTGAGCAACAGGGTGTCGCAGGTGTCCACTTTTTGTGGA > AM260479/1475820‑1476076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |