New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1475922	13 (0.510)	4 (0.170)	4/190	1.8	24.9%	coding (820/939 nt)	h16_A1362	transcriptional regulator, LysR‑family
	?	AM260479	= 1475944	12 (0.510)					coding (842/939 nt)	h16_A1362	transcriptional regulator, LysR‑family

CACCTCGACCGCGCTGATCCGGCAACTGGTGATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCTGATGGCCGAGCGCATCGGCGACGCGCTGGCGGTCTTGTTCGCGCAGGCGCGCTGAG  >  AM260479/1475795‑1476042                                                                                                                                |                                                                                                                         cACCTCGACCGCGCTGATCCGGCAACTGGTGATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAgg                                                                                                                    <  1:485495/134‑1 (MQ=255)     tCGACCGCGCTGATCCGGCAACTGGTGATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGc                                                                                                                  >  2:848782/1‑132 (MQ=255)       gACCGCGCTGATCCGGCAACTGGTGATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAga                                                                                                              <  1:954191/134‑1 (MQ=255)                          cTGGTGATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGgcgcg                                                                                           >  2:104719/1‑134 (MQ=255)                               gATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTggtgg                                                                                               >  1:42392‑M2/1‑120 (MQ=255)                               gATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTggtgg                                                                                               <  2:42392‑M2/125‑6 (MQ=255)                                aTGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTcg                                                                                     <  1:848782/134‑1 (MQ=255)                                                  gcgcTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGcgccgc                                                                   <  1:104719/134‑1 (MQ=255)                                                            aCCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCt                                                          >  1:181004/1‑133 (MQ=255)                                                                      tgtgATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCagcgtcagcgtctggccctgca                                                                                                    <  2:565610‑M1/81‑23 (MQ=255)                                                                      tgtgATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCagcgtcagcgtctggccctgca                                                                                                    >  1:565610‑M1/1‑59 (MQ=255)                                                                      tgtgATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTggtggcggtcgcgc                                                                                      >  1:241966‑M2/1‑81 (MQ=255)                                                                      tgtgATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTggtggcggtcgcgc                                                                                      <  2:241966‑M2/95‑15 (MQ=255)                                                                      tgtgATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCTGATGGCCGAgc                                               >  2:274295/1‑134 (MQ=255)                                                                                         cgccAGGCGCTGGTCTACGTGCCACTGCGCGACCGCTACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCTGATGGCCGAGCGCATCGGCGACGCGCTGGc                            >  2:396688/1‑134 (MQ=255)                                                                                                                   gcgcGACCGCCACCagcgtcagcgtctggccctgcaggtggcggtcgcgcagtggcacgtagaccagcgcctggcgggcgcgctcttccatcaca                                         <  2:241966‑M1/95‑82 (MQ=255)                                                                                                                   gcgcGACCGCCACCagcgtcagcgtctggccctgcaggtggcggtcgcgcagtggcacgtagaccagcgcctggcgggcgcgctcttccatcaca                                         >  1:241966‑M1/1‑14 (MQ=255)                                                                                                                      cgACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGcgccgc                                                                   <  1:464563/66‑1 (MQ=255)                                                                                                                      cgACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGcgccgc                                                                   >  2:464563/1‑66 (MQ=255)                                                                                                                      cgACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCg                                                              >  2:362761/1‑71 (MQ=255)                                                                                                                      cgACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCg                                                              <  1:362761/71‑1 (MQ=255)                                                                                                                            ccaccagcgtcagcgtctggccctgcaggtggcggtcgcgcagtggcacgtagaccagcgcctggcgggcgcgctcttccatcacatcgagcgggttcagcagcgcgatgccggtgcccagcatc  <  2:42392‑M1/125‑121 (MQ=255)                                                                                                                            ccaccagcgtcagcgtctggccctgcaggtggcggtcgcgcagtggcacgtagaccagcgcctggcgggcgcgctcttccatcacatcgagcgggttcagcagcgcgatgccggtgcccagcatc  >  1:42392‑M1/1‑5 (MQ=255)                                                                                                                                |                                                                                                                         CACCTCGACCGCGCTGATCCGGCAACTGGTGATGCTGGGCACCGGCATCGCGCTGCTGAACCCGCTCGATGTGATGGAAGAGCGCGCCCGCCAGGCGCTGGTCTACGTGCCACTGCGCGACCGCCACCTGCAGGGCCAGACGCTGACGCTGGTGGCGCGCGCTCGCGGCCCGCTCAGCGCCGCTGCCGAGCTGATGGCCGAGCGCATCGGCGACGCGCTGGCGGTCTTGTTCGCGCAGGCGCGCTGAG  >  AM260479/1475795‑1476042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.