New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2042478 =	13 (0.510)	4 (0.160)	4/202	1.9	25.9%	coding (224/2805 nt)	mnhAB	Multisubunit Na+/H+ antiporter, MnhA and MhnB subunits
	?	AM260479	= 2042956	10 (0.400)					intergenic (‑255/‑384)	mnhAB/h16_A1882	Multisubunit Na+/H+ antiporter, MnhA and MhnB subunits/Asp‑tRNA Asn / Glu‑tRNA Gln amidotransferase A subunit or related amidase

GCTGCTGAGCCTGCGCGGCGCGGTCTTCGAGCAGCCGGGGCATGCGCTGGGCTGGCGCGTGGCGTGGCTGCCGCAGCTCGGGCTGGACCTGTCGCTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2042576‑2042478 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGCTGCTGCGCAGCACGCGCCGTCGCCGCGCGTATTCAGATTCCTTTTGCAAGGCGATGAATTTTTTCGTGCGCCGCGCAATAAGGCACGCATGACTTGCGCAATGCCGGCAGAATCCGGAAAGTAGGGGGAA  <  AM260479/2042956‑2042824                                                                                                                                                                                                                                          GCTGCTGAGCCTGCGCGGCGCGGTCTTCGAGCAGCCGGGGCATGCGCTGGGCTGGCGCGTGGCGTGGCTGCCGCAGCTCGGGCTGGACCTGTCGCTGCGCGCTGCTGCGCAGCACGCGCCGTCGCCGCGCGTAT                                                                                                    >  2:80091/1‑134                  GCGCGGTCTTCGAGCAGCCGGGGCATGCGCTGGGCTGGCGCGTGGCGTGGCTGCCGCAGCTCGGGCTGGACCTGTCGCTGCGCGCTGCTGCGCAGCACGCGCCGTCGCCGCGCGTATTCAGATTCCTTTTGCAA                                                                                   <  2:1021181/134‑1                                                                GTGGCTGCCGCAGCTCGGGCTGGACCTGTCGCTGCGCGCTGCTGCGCAGCACGCGCCGTCGCCGCGCGTATTCAGATTCCTTTTGCAAGGCGATGAATTTTTTCGTGCGCCGCGCAATAAGGCACGCATGACTT                                     >  1:950618/1‑134                                                                                                  CGCGCTGCTGCGCAGCACGCGCCGTCGCCGCGCGTATTCAGATTCCTTTTGCAAGGCGATGAATTTTTTCGTGCGCCGCGCAATAAGGCACGCATGACTTGCGCAATGCCGGCAGAATCCGGAAAGTAGGGGG    <  1:80091/133‑1                                                                                                   GCGCTGCTGCGCAGCACGCGCCGTCGCCGCGCGTATTCAGATTCCTTTTGCAAGGCGATGAATTTTTTCGTGCGCCGCGCAATAAGGCACGCATGACTTGCGCAATGCCGGCAGAATCCGGAAAGTAGGGGGAA  >  1:410533/1‑134                                                                                                                                                                                                                                          GCTGCTGAGCCTGCGCGGCGCGGTCTTCGAGCAGCCGGGGCATGCGCTGGGCTGGCGCGTGGCGTGGCTGCCGCAGCTCGGGCTGGACCTGTCGCTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2042576‑2042478 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGCTGCTGCGCAGCACGCGCCGTCGCCGCGCGTATTCAGATTCCTTTTGCAAGGCGATGAATTTTTTCGTGCGCCGCGCAATAAGGCACGCATGACTTGCGCAATGCCGGCAGAATCCGGAAAGTAGGGGGAA  <  AM260479/2042956‑2042824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.