New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2042478 =	13 (0.510)	4 (0.160)	4/202	1.9	25.9%	coding (224/2805 nt)	mnhAB	Multisubunit Na+/H+ antiporter, MnhA and MhnB subunits
	?	AM260479	= 2042956	10 (0.400)					intergenic (‑255/‑384)	mnhAB/h16_A1882	Multisubunit Na+/H+ antiporter, MnhA and MhnB subunits/Asp‑tRNA Asn / Glu‑tRNA Gln amidotransferase A subunit or related amidase

TTCCCCCTACTTTCCGGATTCTGCCGGCATTGCGCAAGTCATGCGTGCCTTATTGCGCGGCGCACGAAAAAATTCATCGCCTTGCAAAAGGAATCTGAATACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGCCGCCGCGTAGTACCATCGGCCGCGAGGCGGCTTCCAGCTCGGTGGCGCCGCACATCATCGCCATGGCGGAGGCGCTGGGATTCGAGGTCGTGGCCGAGGGCATCGAGCAG  >  AM260479/2042824‑2043067                                                                                                                                     |                                                                                                                ttCCCCCTACTTTCCGGATTCTGCCGGCATTGCGCAAGTCATGCGTGCCTTATTGCGCGGCGCACGAAAAAATTCATCGCCTTGCAAAAGGAATCTGAATACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGc                                                                                                                >  1:410533‑M2/1‑133 (MQ=255)   cccccTACTTTCCGGATTCTGCCGGCATTGCGCAAGTCATGCGTGCCTTATTGCGCGGCGCACGAAAAAATTCATCGCCTTGCAAAAGGAATCTGAATACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGcg                                                                                                               <  1:80091‑M2/133‑3 (MQ=255)                                    aaGTCATGCGTGCCTTATTGCGCGGCGCACGAAAAAATTCATCGCCTTGCAAAAGGAATCTGAATACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGcgcagcgacaggtccagcccgagctgcggcagccac                                                                             >  1:950618‑M2/1‑98 (MQ=255)                                                              gcACGAAAAAATTCATCGCCTTGCAAAAGGAATCTGAATACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGCCGCCGCGTAGTACCATCGGCCGCGAGGCGGCTTCCAGCTCGGTGGCGCCGCACATCATCGc                                                   >  1:74627/1‑134 (MQ=255)                                                              gcACGAAAAAATTCATCGCCTTGCAAAAGGAATCTGAATACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGCCGCCGCGTAGTACCATCGGCCGCGAGGCGGCTTCCAGCTCGGTGGCGCCGCACATCATCGc                                                   >  2:368622/1‑134 (MQ=255)                                                                   aaaaaaTTCATCGCCTTGCAAAAGGAATCTGAATACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGCCGCCGCGTAGTACCATCGGCCGCGAGGCGGCtt                                                                               >  1:754654/1‑101 (MQ=255)                                                                   aaaaaaTTCATCGCCTTGCAAAAGGAATCTGAATACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGCCGCCGCGTAGTACCATCGGCCGCGAGGCGGCtt                                                                               <  2:754654/101‑1 (MQ=255)                                                                                  ttGCAAAAGGAATCTGAATACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGcgcagcgacaggtccagcccgagctgcggcagccacgccacgcgccagcccagcgcatgccccggctgctcgaagaccgcgc                               <  2:1021181‑M2/134‑83 (MQ=255)                                                                                                  aaTACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGCCGCCGCGTAGTACCATCGGCcgcg                                                                                        >  1:329471/1‑61 (MQ=255)                                                                                                  aaTACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGCCGCCGCGTAGTACCATCGGCcgcg                                                                                        <  2:329471/61‑1 (MQ=255)                                                                                                   aTACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGcgcagcgacaggtccagcccgagctgcggcagccacgccacgcgccagcccagcgcatgccccggctgctcgaagaccgcgccgcgcaggctcagcagc              >  2:80091‑M2/1‑35 (MQ=255)                                                                                                          cggcgACGGCGCGTGCTGCGCAGCAGCGCCGCCGCGTAGTACCATCGGCCGCGAGGCGGCTTCCAGCTCGGTGGCGCCGCACATCATCGCCATGGCGGAGGCGCTGGGATTCGAGGTCGTGGCCGAGGGCATc        >  2:338197/1‑133 (MQ=255)                                                                                                                cGGCGCGTGCTGCGCAGCAGCGCCGCCGCGTAGTACCATCGGCCGCGAGGCGGCTTCCAGCTCGGTGGCGCCGCACATCATCGCCATGGCGGAGGCGCTGGGATTCGAGGTCGTGGCCGAGGGCATCGagcag  >  1:2388/1‑133 (MQ=255)                                                                                                                       tgctgcGCAGCAGCGCCGCCGCGTAGTACCATCGGCCGCGAGGCGGCTTCCAGCTCGGTGgcgc                                                                >  1:443744/1‑64 (MQ=255)                                                                                                                       tgctgcGCAGCAGCGCCGCCGCGTAGTACCATCGGCCGCGAGGCGGCTTCCAGCTCGGTGgcgc                                                                <  2:443744/64‑1 (MQ=255)                                                                                                                                     |                                                                                                                TTCCCCCTACTTTCCGGATTCTGCCGGCATTGCGCAAGTCATGCGTGCCTTATTGCGCGGCGCACGAAAAAATTCATCGCCTTGCAAAAGGAATCTGAATACGCGCGGCGACGGCGCGTGCTGCGCAGCAGCGCCGCCGCGTAGTACCATCGGCCGCGAGGCGGCTTCCAGCTCGGTGGCGCCGCACATCATCGCCATGGCGGAGGCGCTGGGATTCGAGGTCGTGGCCGAGGGCATCGAGCAG  >  AM260479/2042824‑2043067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.