New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2042478 =	13 (0.510)	4 (0.160)	4/202	1.9	25.9%	coding (224/2805 nt)	mnhAB	Multisubunit Na+/H+ antiporter, MnhA and MhnB subunits
	?	AM260479	= 2042956	10 (0.400)					intergenic (‑255/‑384)	mnhAB/h16_A1882	Multisubunit Na+/H+ antiporter, MnhA and MhnB subunits/Asp‑tRNA Asn / Glu‑tRNA Gln amidotransferase A subunit or related amidase

CATGAACAGCAGCAGCAGGCAGAAGAAGCGCACCGCGGATTCATTGCGCGCGAGGTAGTAGCGCGCGTACAGGATCACCAGCAGGCCCACGCCGAGCACCAGCAGCGCAAACAGGTACGACAGGCCGTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGGCTGCTCGAAGACCGCGCCGCGCAGGCTCAGCAGCAGCACCAGCGCGGCCAGCGGCAAGCCGATGA  >  AM260479/2042345‑2042607                                                                                                                                      |                                                                                                                                  ttccccctactttccggattctgccggcattgcgcaagtcatgcgtgccttattgcgcggcgcacgaaaaaattcatcgccttgcaaaaggaatctgaatacgcgcggcgacggcgcgtgctgcgcagcagcgc                                                                                                                                   >  1:410533‑M1/134‑134 (MQ=255)   ccccctactttccggattctgccggcattgcgcaagtcatgcgtgccttattgcgcggcgcacgaaaaaattcatcgccttgcaaaaggaatctgaatacgcgcggcgacggcgcgtgctgcgcagcagcgcg                                                                                                                                  <  1:80091‑M1/2‑1 (MQ=255)                                    aagtcatgcgtgccttattgcgcggcgcacgaaaaaattcatcgccttgcaaaaggaatctgaatacgcgcggcgacggcgcgtgctgcgcagcagcgCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAgccac                                                                                                >  1:950618‑M1/99‑134 (MQ=255)                                                                    tACAGGATCACCAGCAGGCCCACGCCGAGCACCAGCAGCGCAAACAGGTACGACAGGCCGTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGgctg                                                                >  1:820328/1‑134 (MQ=255)                                                                      cAGGATCACCAGCAGGCCCACGCCGAGCACCAGCAGCGCAAACAGGTACGACAGGCCGTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGgctgct                                                              >  2:208259/1‑134 (MQ=255)                                                                        ggATCACCAGCAGGCCCACGCCGAGCACCAGCAGCGCAAACAGGTACGACAGGCCGTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGGCTGCTCg                                                            <  1:208259/134‑1 (MQ=255)                                                                                  ttgcaaaaggaatctgaatacgcgcggcgacggcgcgtgctgcgcagcagcgCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGGCTGCTCGAAGAccgcgc                                                  <  2:1021181‑M1/82‑1 (MQ=255)                                                                                      cccACGCCGAGCACCAGCAGCGCAAACAGGTACGACAGGCCGTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGGCTGCTCGAAGAccgcgccgcg                                              <  2:820328/134‑1 (MQ=255)                                                                                                   ccAGCAGCGCAAACAGGTACGACAGGCCGTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGccc                                                                      >  1:1054068/1‑97 (MQ=255)                                                                                                   ccAGCAGCGCAAACAGGTACGACAGGCCGTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGccc                                                                      <  2:1054068/97‑1 (MQ=255)                                                                                                   atacgcgcggcgacggcgcgtgctgcgcagcagcgCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGGCTGCTCGAAGACCGCGCCGCGCAGGCTcagcagc                                 >  2:80091‑M1/36‑134 (MQ=255)                                                                                                                        aCAGGCCGTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGGCTGCTCGAAGACCGCGCCGCGCAGGCTCAGCAGCAGCACCAGCGCGGCCAGc               <  2:892212/131‑1 (MQ=255)                                                                                                                        aCAGGCCGTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGGCTGCTCGAAGACCGCGCCGCGCAGGCTCAGCAGCAGCACCAGCGCGGCCAGc               >  1:892212/1‑131 (MQ=255)                                                                                                                               gTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGccc                                                                      <  2:54633/69‑1 (MQ=255)                                                                                                                               gTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGccc                                                                      >  1:54633/1‑69 (MQ=255)                                                                                                                               gTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGGCTGCTCGAAGACCGCGCCGCGCAGGCTCAGCAGCAGCACCAGCGCGGCCAGCGGCAAGCCga     >  2:190257/1‑134 (MQ=255)                                                                                                                                tCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGGCTGCTCGAAGACCGCGCCGCGCAGGCTCAGCAGCAGCACCAGCGCGGCCAGCGGCAAGCCgat    >  1:293093/1‑134 (MQ=255)                                                                                                                                  cAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGGCTGCTCGAAGACCGCGCCGCGCAGGCTCAGCAGCAGCACCAGCGCGGCCAGCGGCAAGCCgatga  <  1:190257/134‑1 (MQ=255)                                                                                                                                      |                                                                                                                                  CATGAACAGCAGCAGCAGGCAGAAGAAGCGCACCGCGGATTCATTGCGCGCGAGGTAGTAGCGCGCGTACAGGATCACCAGCAGGCCCACGCCGAGCACCAGCAGCGCAAACAGGTACGACAGGCCGTCCAGCCGCAGCGACAGGTCCAGCCCGAGCTGCGGCAGCCACGCCACGCGCCAGCCCAGCGCATGCCCCGGCTGCTCGAAGACCGCGCCGCGCAGGCTCAGCAGCAGCACCAGCGCGGCCAGCGGCAAGCCGATGA  >  AM260479/2042345‑2042607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.