New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2269737 =	16 (0.630)	4 (0.170)	4/186	1.8	23.1%	coding (1148/1386 nt)	h16_A2086	Amidase
	?	AM260479	2269768 =	12 (0.520)					coding (1179/1386 nt)	h16_A2086	Amidase

GGCTGTTCGGAGTGGTTGAACACCGCTGTGAAGTGAGAGTCCTTGAGCGGCAGGTCGCCGCCGCTGTTGATGGCATCGGCGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2269821‑2269737 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggcgaCCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTC  >  AM260479/2269768‑2269812                                                                                                                                    GGCTGTTCGGAGTGGTTGAACACCGCTGTGAAGTGAGAGTCCTTGAGCGGCAGGTCGCCGCCGCTGTTGATGGCATCGGCGGCGACCTGCCGCTCAAGGA                                <  1:771555/100‑1 GGCTGTTCGGAGTGGTTGAACACCGCTGTGAAGTGAGAGTCCTTGAGCGGCAGGTCGCCGCCGCTGTTGATGGCATCGGCGGCGACCTGCCGCTCAAGGA                                >  2:771555/1‑100   CTGTTCGGAGTGGTTGAACACCGCTGTGAAGTGAGAGTCCTTGAGCGGCAGGTCGCCGCCGCTGTTGATGGCATCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCA                     >  1:108041/1‑109   CTGTTCGGAGTGGTTGAACACCGCTGTGAAGTGAGAGTCCTTGAGCGGCAGGTCGCCGCCGCTGTTGATGGCATCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCA                     <  2:108041/109‑1                              GAAGTGAGAGTCCTTGAGCGGCAGGTCGCCGCCGCTGTTGATGGCATCGGCGGCGA                                               >  1:931243/1‑56                              GAAGTGAGAGTCCTTGAGCGGCAGGTCGCCGCCGCTGTTGATGGCATCGGCGGCGA                                               <  2:931243/56‑1                                                                                 GGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTC  <  1:60306/50‑1                                                                                 GGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTC  >  2:60306/1‑50                                                                                                                                    GGCTGTTCGGAGTGGTTGAACACCGCTGTGAAGTGAGAGTCCTTGAGCGGCAGGTCGCCGCCGCTGTTGATGGCATCGGCGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2269821‑2269737 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggcgaCCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTC  >  AM260479/2269768‑2269812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.