New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2269737 =	16 (0.630)	4 (0.170)	4/186	1.8	23.1%	coding (1148/1386 nt)	h16_A2086	Amidase
	?	AM260479	2269768 =	12 (0.520)					coding (1179/1386 nt)	h16_A2086	Amidase

ACGCGCATGCAGCAGCTGCGCGAGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAGCCCGCGGCA  >  AM260479/2269649‑2269828                                                                                                                         |                                                             aCGCGCATGCAGCAGCTGCGCGAGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGa                                                <  1:229421/134‑1 (MQ=255)   gcgcATGCAGCAGCTGCGCGAGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGAct                                              <  2:111498/134‑1 (MQ=255)                       aGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGAc                                                              <  2:990950/98‑1 (MQ=255)                       aGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGAc                                                              >  1:990950/1‑98 (MQ=255)                                 ggCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGgtgt                            >  2:384291/1‑122 (MQ=255)                                 ggCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGgtgt                            <  1:384291/122‑1 (MQ=255)                                    ggctgttcggagtggttgaacaccgctgtgaagtgagagtccttgagcggcaggtcgccgccgctgttgatggcatcggcggcgaCCTGCCGCTCAAGGa                                                >  2:771555‑M2/86‑100 (MQ=255)                                    ggctgttcggagtggttgaacaccgctgtgaagtgagagtccttgagcggcaggtcgccgccgctgttgatggcatcggcggcgaCCTGCCGCTCAAGGa                                                <  1:771555‑M2/15‑1 (MQ=255)                                      ctgttcggagtggttgaacaccgctgtgaagtgagagtccttgagcggcaggtcgccgccgctgttgatggcatcggcggcgaCCTGCCGCTCAAGGACTCTCACTTca                                     >  1:108041‑M2/84‑109 (MQ=255)                                      ctgttcggagtggttgaacaccgctgtgaagtgagagtccttgagcggcaggtcgccgccgctgttgatggcatcggcggcgaCCTGCCGCTCAAGGACTCTCACTTca                                     <  2:108041‑M2/26‑1 (MQ=255)                                          ccAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCt                                                      <  2:353279/87‑1 (MQ=255)                                          ccAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCt                                                      >  1:353279/1‑87 (MQ=255)                                                              tctcGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGCTGTTGAT‑GGCATCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTca                                     <  1:860086/84‑1 (MQ=16)                                                              tctcGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGCTG‑TTGATGGCATCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTca                                     >  2:860086/1‑84 (MQ=16)                                                               tgaagtgagagtccttgagcggcaggTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAg           <  2:108041‑M1/83‑1 (MQ=255)                                                               tgaagtgagagtccttgagcggcaggTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAg           >  1:108041‑M1/27‑109 (MQ=255)                                                                          tccttgagcggcaggTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAGcc         <  1:771555‑M1/85‑1 (MQ=255)                                                                          tccttgagcggcaggTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAGcc         >  2:771555‑M1/16‑100 (MQ=255)                                                                                         TCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTc                                      >  1:931243‑M1/1‑56 (MQ=255)                                                                                         TCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTc                                      <  2:931243‑M1/56‑1 (MQ=255)                                                                                                   tG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAGCCCGCGGCa  >  2:190517/1‑82 (MQ=255)                                                                                                   tG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAGCCCGCGGCa  <  1:190517/82‑1 (MQ=255)                                                                                                                    ggcgaCCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTc                  <  1:60306‑M2/45‑1 (MQ=255)                                                                                                                    ggcgaCCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTc                  >  2:60306‑M2/6‑50 (MQ=255)                                                                                                                         |                                                             ACGCGCATGCAGCAGCTGCGCGAGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAGCCCGCGGCA  >  AM260479/2269649‑2269828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.