New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2269737 =	16 (0.630)	4 (0.170)	4/186	1.8	23.1%	coding (1148/1386 nt)	h16_A2086	Amidase
	?	AM260479	2269768 =	12 (0.520)					coding (1179/1386 nt)	h16_A2086	Amidase

AGACCTTCCAGGCCTTCACGCGCATGCAGCAGCTGCGCGAGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAGCC  >  AM260479/2269632‑2269821                                                                                                          |                                                                                      aGACCTTCCAGGCCTTCACGCGCATGCAGCAGCTGCGCGAGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAgc                                                                >  1:593506/1‑128 (MQ=255) aGACCTTCCAGGCCTTCACGCGCATGCAGCAGCTGCGCGAGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAgc                                                                <  2:593506/128‑1 (MQ=255)                  aCGCGCATGCAGCAGCTGCGCGAGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGa                                         <  1:229421/134‑1 (MQ=255)                    gcgcATGCAGCAGCTGCGCGAGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGAct                                       <  2:111498/134‑1 (MQ=255)                                        aGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGAc                                                       <  2:990950/98‑1 (MQ=255)                                        aGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGAc                                                       >  1:990950/1‑98 (MQ=255)                                                  ggCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGgtgt                     <  1:384291/122‑1 (MQ=255)                                                  ggCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGgtgt                     >  2:384291/1‑122 (MQ=255)                                                           ccAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCt                                               >  1:353279/1‑87 (MQ=255)                                                           ccAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCt                                               <  2:353279/87‑1 (MQ=255)                                                             gagtggttgaacaccgctgtgaagtgagagtccttgagcggcaggTcgcc                                                                                   >  2:60306‑M1/46‑50 (MQ=255)                                                             gagtggttgaacaccgctgtgaagtgagagtccttgagcggcaggTcgcc                                                                                   <  1:60306‑M1/5‑1 (MQ=255)                                                                             gATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGa                                                        <  2:1022217/60‑1 (MQ=255)                                                                             gATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGa                                                        >  1:1022217/1‑60 (MQ=255)                                                                              aTCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGa                                                                              <  2:326057/38‑1 (MQ=255)                                                                              aTCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGa                                                                              >  1:326057/1‑38 (MQ=255)                                                                               tctcGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGCTGTTGAT‑GGCATCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTca                              <  1:860086/84‑1 (MQ=16)                                                                               tctcGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGCTG‑TTGATGGCATCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTca                              >  2:860086/1‑84 (MQ=16)                                                                                tgaagtgagagtccttgagcggcaggTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAg    <  2:108041‑M1/83‑1 (MQ=255)                                                                                tgaagtgagagtccttgagcggcaggTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAg    >  1:108041‑M1/27‑109 (MQ=255)                                                                                           tccttgagcggcaggTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAGcc  <  1:771555‑M1/85‑1 (MQ=255)                                                                                           tccttgagcggcaggTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAGcc  >  2:771555‑M1/16‑100 (MQ=255)                                                                                                          TCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTc                               >  1:931243‑M1/1‑56 (MQ=255)                                                                                                          TCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTc                               <  2:931243‑M1/56‑1 (MQ=255)                                                                                                          |                                                                                      AGACCTTCCAGGCCTTCACGCGCATGCAGCAGCTGCGCGAGGCCACCGTGGCCGCGACCCAGCCCTATGATTTCGTGATCTCGCCGGTGTCACCGGTGCTGCCCTTCGCCGCCGATG‑CCATCAACAGCGGCGGCGACCTGCCGCTCAAGGACTCTCACTTCACAGCGGTGTTCAACCACTCCGAACAGCC  >  AM260479/2269632‑2269821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.