| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 3099949 | 15 (0.590) | 5 (0.210) | 4/188 | 1.8 | 28.7% | coding (587/1113 nt) | acrA5 | Cation/multidrug efflux system, mebrane‑fusion component |
| ? | AM260479 | 3100058 = | 11 (0.470) | coding (696/1113 nt) | acrA5 | Cation/multidrug efflux system, mebrane‑fusion component | |||||
CGTTCGACAAGTACCAGGCCGACCTGGACGTCGCCCACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3099811‑3099949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgcCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGC > AM260479/3100058‑3100116 CGTTCGACAAGTACCAGGCCGACCTGGACGTCGCCCACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCG < 1:1044051/134‑1 CGACAAGTACCAGGCCGACCTGGACGTCGCCCACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCG > 2:525760/1‑134 CGACAAGTACCAGGCCGACCTGGACGTCGCCCACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCG > 2:650582/1‑134 CAAGTACCAGGCCGACCTGGACGTCGCCCACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCCG < 1:525760/134‑1 CACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCCa > 1:525445/1‑105 CACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCCa < 2:525445/106‑2 AGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACC > 2:862718/1‑134 AGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCG > 1:403283/1‑77 AGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCG < 2:403283/77‑1 CCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGC < 1:862718/134‑1 CGTTCGACAAGTACCAGGCCGACCTGGACGTCGCCCACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3099811‑3099949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgcCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGC > AM260479/3100058‑3100116 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |