New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 3099949	15 (0.590)	5 (0.210)	4/188	1.8	28.7%	coding (587/1113 nt)	acrA5	Cation/multidrug efflux system, mebrane‑fusion component
	?	AM260479	3100058 =	11 (0.470)					coding (696/1113 nt)	acrA5	Cation/multidrug efflux system, mebrane‑fusion component

CAAGTACCAGGCCGACCTGGACGTCGCCCACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCG  >  AM260479/3099818‑3100079                                                                                                                                    |                                                                                                                                   cAAGTACCAGGCCGACCTGGACGTCGCCCACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCcg                                                                                                                                  <  1:525760‑M1/134‑3 (MQ=255)        cAGGCCGACCTGGACGTCGCCCACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCGGTGCAGcc                                                                                                                           >  1:373090/1‑134 (MQ=255)                             cACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCca                                                                                                                                  <  2:525445‑M1/106‑3 (MQ=255)                             cACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCca                                                                                                                                  >  1:525445‑M1/1‑104 (MQ=255)                                                   aGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCcgcggtcggccagccggtggcgctggacgtggaaggcgccggccgcttcacc                                                                                >  2:862718‑M1/1‑82 (MQ=255)                                                   aGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTc                                                                                >  1:681433/1‑134 (MQ=255)                                                          ccTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCcgcggtcggccagccggtggcgctggacgtggaaggcgccggccgcttcaccggcaagc                                                                         <  1:862718‑M1/134‑60 (MQ=255)                                                              gCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTgcgc                                                                       <  2:373090/132‑1 (MQ=255)                                                                       cAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGctggaact                                                            >  2:246568/1‑134 (MQ=255)                                                                          aaGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGctggaactgga                                                         <  1:246568/134‑1 (MQ=255)                                                                            ggCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAg                                                       <  2:681433/134‑1 (MQ=255)                                                                                                   aGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTg                                >  2:232762/1‑134 (MQ=255)                                                                                                             cGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGcgccg                      >  1:135253/1‑134 (MQ=255)                                                                                                              gACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGAc                                                                                      <  1:333768/69‑1 (MQ=255)                                                                                                              gACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGAc                                                                                      <  1:774296/69‑1 (MQ=255)                                                                                                              gACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGAc                                                                                      >  2:333768/1‑69 (MQ=255)                                                                                                              gACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGAc                                                                                      >  2:774296/1‑69 (MQ=255)                                                                                                                    aTGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGtct                                                                                                             >  2:291722/1‑40 (MQ=255)                                                                                                                    aTGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGtct                                                                                                             <  1:291722/40‑1 (MQ=255)                                                                                                                                 gcgcgGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGgcg  >  1:582477/1‑134 (MQ=255)                                                                                                                                    |                                                                                                                                   CAAGTACCAGGCCGACCTGGACGTCGCCCACGCCAACCTAGACGCGGCCCAGGGCGGCCTGGCGGTGGCGCAGAAGGCGCTGGCCGACACCGTGGTCAAGGCCCCGCTCGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCG  >  AM260479/3099818‑3100079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.