New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 309994915 (0.590)5 (0.210) 4/188 1.8 28.7% coding (587/1113 nt) acrA5 Cation/multidrug efflux system, mebrane‑fusion component
?AM260479 3100058 = 11 (0.470)coding (696/1113 nt) acrA5 Cation/multidrug efflux system, mebrane‑fusion component

CGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCGCAGCATCATGGTCTATAT  >  AM260479/3099926‑3100171
                                                                                                                                    |                                                                                                                 
caagtaccaggccgacctggacgtcgcccacgccaacctagacgcggcccagggcggcctggcggtggcgcagaaggcgctggccgacaccgtggtcaaggccccgctcgacggcatggtggccgcgcgcgccg                                                                                                                  <  1:525760‑M2/2‑1 (MQ=255)
cGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGcgccg                                                                                                                  >  1:135253/1‑134 (MQ=255)
                    gcgcgGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGgcg                                                                                              >  1:582477/1‑134 (MQ=255)
                            cacgccaacctagacgcggcccagggcggcctggcggtggcgcagaaggcgctggccgacaccgtggtcaaggccccgctcgacggcatggtggccgcgcgcgcca                                                                                                                  >  1:525445‑M2/105‑105 (MQ=255)
                            cacgccaacctagacgcggcccagggcggcctggcggtggcgcagaaggcgctggccgacaccgtggtcaaggccccgctcgacggcatggtggccgcgcgcgcca                                                                                                                  <  2:525445‑M2/2‑2 (MQ=255)
                                                  agggcggcctggcggtggcgcagaaggcgctggccgacaccgtggtcaaggccccgctcgacggcatggtggccgcgcgcgcCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCAcc                                                                >  2:862718‑M2/83‑134 (MQ=255)
                                                    gATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCgg                                                              <  2:135253/134‑1 (MQ=255)
                                                         cctggcggtggcgcagaaggcgctggccgacaccgtggtcaaggccccgctcgacggcatggtggccgcgcgcgcCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGc                                                         <  1:862718‑M2/59‑1 (MQ=255)
                                                                gTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTgc                                                   <  2:400955/133‑1 (MQ=255)
                                                                              ccTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAg                                    >  1:816479/1‑134 (MQ=255)
                                                                                     gTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCa                             <  1:232762/134‑1 (MQ=255)
                                                                                      tGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAg                            >  1:991563/1‑134 (MQ=255)
                                                                                                  aaGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCgcagc                <  1:650582/134‑1 (MQ=255)
                                                                                                           tCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCGCAGCATCATGGTc       <  2:6303/134‑1 (MQ=255)
                                                                                                                aTGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCGCAGCATCATGGTCtataa  >  1:241672/1‑133 (MQ=255)
                                                                                                                aTGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCGCAGCATCATGGTCTatat  <  2:991563/134‑1 (MQ=255)
                                                                                                                                    |                                                                                                                 
CGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCGCAGCATCATGGTCTATAT  >  AM260479/3099926‑3100171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.