| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 3099949 | 15 (0.590) | 5 (0.210) | 4/188 | 1.8 | 28.7% | coding (587/1113 nt) | acrA5 | Cation/multidrug efflux system, mebrane‑fusion component |
| ? | AM260479 | 3100058 = | 11 (0.470) | coding (696/1113 nt) | acrA5 | Cation/multidrug efflux system, mebrane‑fusion component | |||||
CGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCGCAGCATCATGGTCTATAT > AM260479/3099926‑3100171 | caagtaccaggccgacctggacgtcgcccacgccaacctagacgcggcccagggcggcctggcggtggcgcagaaggcgctggccgacaccgtggtcaaggccccgctcgacggcatggtggccgcgcgcgccg < 1:525760‑M2/2‑1 (MQ=255)cGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGcgccg > 1:135253/1‑134 (MQ=255) gcgcgGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGgcg > 1:582477/1‑134 (MQ=255) cacgccaacctagacgcggcccagggcggcctggcggtggcgcagaaggcgctggccgacaccgtggtcaaggccccgctcgacggcatggtggccgcgcgcgcca > 1:525445‑M2/105‑105 (MQ=255) cacgccaacctagacgcggcccagggcggcctggcggtggcgcagaaggcgctggccgacaccgtggtcaaggccccgctcgacggcatggtggccgcgcgcgcca < 2:525445‑M2/2‑2 (MQ=255) agggcggcctggcggtggcgcagaaggcgctggccgacaccgtggtcaaggccccgctcgacggcatggtggccgcgcgcgcCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCAcc > 2:862718‑M2/83‑134 (MQ=255) gATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCgg < 2:135253/134‑1 (MQ=255) cctggcggtggcgcagaaggcgctggccgacaccgtggtcaaggccccgctcgacggcatggtggccgcgcgcgcCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGc < 1:862718‑M2/59‑1 (MQ=255) gTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTgc < 2:400955/133‑1 (MQ=255) ccTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAg > 1:816479/1‑134 (MQ=255) gTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCa < 1:232762/134‑1 (MQ=255) tGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAg > 1:991563/1‑134 (MQ=255) aaGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCgcagc < 1:650582/134‑1 (MQ=255) tCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCGCAGCATCATGGTc < 2:6303/134‑1 (MQ=255) aTGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCGCAGCATCATGGTCtataa > 1:241672/1‑133 (MQ=255) aTGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCGCAGCATCATGGTCTatat < 2:991563/134‑1 (MQ=255) | CGACGGCATGGTGGCCGCGCGCGCGGTGCAGCCGGGCGAGAAGGTCTCGCCGGATACGCGCCTGGTCGACGTAGTCGACCTGCGCGTGCTGGAACTGGAAGCGCCGATCCCGATGGCGGACGTGGCGCGCGCCGCGGTCGGCCAGCCGGTGGCGCTGGACGTGGAAGGCGCCGGCCGCTTCACCGGCAAGCTGGTGCGCATCAACCCGGCAGTCAGCCAGGGCACGCGCAGCATCATGGTCTATAT > AM260479/3099926‑3100171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |