| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260480 | 2912452 | 2912490 | 39 | 15 [0] | [0] NA | h16_B2579/– | cold shock protein, DNA‑binding/– |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1 = | 0 (0.000) | 10 (0.740) | 9/126 | 0.4 | 100% | intergenic (–/‑1344) | –/pA2 | –/replication initiation protein RepA |
| ? | AM260480 | = 2912451 | 0 (0.000) | intergenic (+242/–) | h16_B2579/– | cold shock protein, DNA‑binding/– | |||||
GCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/167‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcacgggccgtgcctgacctcgtgcggtgcagcaggcGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCGGAGCGCCTG < AM260480/2912451‑2912335 GCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCAC > 2:370079/1‑134 CTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCT < 2:606141/133‑1 GTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCT < 2:956156/134‑1 GTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCT < 2:839778/134‑1 GTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCT < 1:976381/134‑1 CCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGT < 1:370079/134‑1 AAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG < 2:35362/134‑1 AGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGG < 2:449611/134‑1 CCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG < 1:410463/109‑1 CCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG > 2:410463/1‑109 TTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTG < 2:718983/134‑1 AAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGC > 2:689192/1‑134 CGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTG < 1:693207/134‑1 TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGC > 1:226118/1‑134 ATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTG > 2:32892/1‑63 ATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTG < 1:32892/63‑1 ACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGG < 1:689192/134‑1 TGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCGGAG > 2:870946/1‑134 TGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGA < 2:323732/55‑1 TGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGA > 1:323732/1‑55 GTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCGGAGCGCCTG < 1:870946/133‑1 GCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/167‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcacgggccgtgcctgacctcgtgcggtgcagcaggcGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCGGAGCGCCTG < AM260480/2912451‑2912335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |