Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AM260480 2,912,452 Δ39 bp intergenic (+243/–) h16_B2579 → /  cold shock protein, DNA‑binding/–

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AM260480 2912452 2912490 39 15 [0] [0] NA h16_B2579/– cold shock protein, DNA‑binding/–

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 1 =0 (0.000)10 (0.740) 9/126 0.4 100% intergenic (–/‑1344) –/pA2 –/replication initiation protein RepA
?AM260480 = 2912451 0 (0.000)intergenic (+242/–) h16_B2579/– cold shock protein, DNA‑binding/–

GCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/167‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcacgggccgtgcctgacctcgtgcggtgcagcaggcGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCGGAGCGCCTG  <  AM260480/2912451‑2912335
                                                                                                                                                                                                                                                                                            
GCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCAC                                                                                                                                                        >  2:370079/1‑134
            CTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCT                                                                                                                                             <  2:606141/133‑1
                GTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCT                                                                                                                                        <  2:956156/134‑1
                GTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCT                                                                                                                                        <  2:839778/134‑1
                GTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCT                                                                                                                                        <  1:976381/134‑1
                   CCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGT                                                                                                                                     <  1:370079/134‑1
                                  AAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG                                                                                                                      <  2:35362/134‑1
                                                   AGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGG                                                                                                     <  2:449611/134‑1
                                                           CCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG                                                                                                                      <  1:410463/109‑1
                                                           CCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCG                                                                                                                      >  2:410463/1‑109
                                                               TTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTG                                                                                         <  2:718983/134‑1
                                                                                        AAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGC                                                                >  2:689192/1‑134
                                                                                                              CGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTG                                          <  1:693207/134‑1
                                                                                                                TACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGC                                        >  1:226118/1‑134
                                                                                                                     ATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTG                                                                                                          >  2:32892/1‑63
                                                                                                                     ATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTG                                                                                                          <  1:32892/63‑1
                                                                                                                                    ACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGG                    <  1:689192/134‑1
                                                                                                                                                TGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCGGAG        >  2:870946/1‑134
                                                                                                                                                TGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGA                                                                                       <  2:323732/55‑1
                                                                                                                                                TGACCTCGTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGA                                                                                       >  1:323732/1‑55
                                                                                                                                                       GTGCGGTGCAGCAGGCGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCGGAGCGCCTG  <  1:870946/133‑1
                                                                                                                                                                                                                                                                                            
GCGTACCCGCTTCTGCGTGCCAGAAGGCTCCTGGAAAGACCAAAGTGCCGCAGGGCGTACCTGTTTCTGCGTACCCGCTGCCCAGCGCAAGCAGGCCTGCCAGGACAGACCGTACCCATTTCTGCGAGGCTCACGGGCCGTGCCTGACCTCGTGCGGTGCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/167‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcacgggccgtgcctgacctcgtgcggtgcagcaggcGTACCCGATTCTGCGTGGAGCGCAAGGCTGGATGGTGAGCGGGAAAGTGCGCCGCGCAAGGCCAGGCGTGCCGGCTGGCGGCGGCATGGGCATGCGGGGGCTGGAGCGGAGCGCCTG  <  AM260480/2912451‑2912335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.