| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260480 | 2912452 | 2912490 | 39 | 15 [0] | [0] NA | h16_B2579/– | cold shock protein, DNA‑binding/– |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1 = | 0 (0.000) | 10 (0.740) | 9/126 | 0.4 | 100% | intergenic (–/‑1344) | –/pA2 | –/replication initiation protein RepA |
| ? | AM260480 | = 2912451 | 0 (0.000) | intergenic (+242/–) | h16_B2579/– | cold shock protein, DNA‑binding/– | |||||
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAGGTACGCCCTGCGGCACTTTGGTCTTT > AM260480/1‑133 | caggcgctccgctccagcccccgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCAc < 1:870946‑M1/16‑1 (MQ=255) ctccgctccagcccccgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCa > 2:870946‑M1/112‑134 (MQ=255) ccccgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGt < 1:689192‑M1/35‑1 (MQ=255) gccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa > 1:226118‑M1/80‑134 (MQ=255) cagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACg < 1:693207‑M1/57‑1 (MQ=255) gcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCtt > 2:689192‑M1/56‑134 (MQ=255) tccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCa > 1:323732‑M1/33‑55 (MQ=255) tccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCa < 2:323732‑M1/23‑1 (MQ=255) cagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGaaa < 2:718983‑M1/104‑1 (MQ=255) ccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAGGTACGCCCt < 2:449611‑M1/116‑1 (MQ=255) cagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAAt < 1:32892‑M1/50‑1 (MQ=255) cagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAAt > 2:32892‑M1/14‑63 (MQ=255) cGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAgg < 1:410463‑M1/108‑1 (MQ=255) cGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAgg > 2:410463‑M1/2‑109 (MQ=255) cGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAGGTACGCCCTGCGGCACTTTGGTCttt < 2:35362‑M1/133‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAGGTACGCCCTGCGGCACTTTGGTCTTT > AM260480/1‑133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |