| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260480 | 2912452 | 2912490 | 39 | 15 [0] | [0] NA | h16_B2579/– | cold shock protein, DNA‑binding/– |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1 = | 0 (0.000) | 10 (0.740) | 9/126 | 0.4 | 100% | intergenic (–/‑1344) | –/pA2 | –/replication initiation protein RepA |
| ? | AM260480 | = 2912451 | 0 (0.000) | intergenic (+242/–) | h16_B2579/– | cold shock protein, DNA‑binding/– | |||||
CAGGCGCTCCGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGC > AM260480/2912335‑2912490 | cAGGCGCTCCGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcac < 1:870946‑M2/133‑17 (MQ=255) ctccgctccAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtca > 2:870946‑M2/1‑111 (MQ=255) ccccGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgt < 1:689192‑M2/134‑36 (MQ=255) gccAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta > 1:226118‑M2/1‑79 (MQ=255) cAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacg < 1:693207‑M2/134‑58 (MQ=255) gcggcgCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgctt > 2:689192‑M2/1‑55 (MQ=255) tCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtca > 1:323732‑M2/1‑32 (MQ=255) tCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtca < 2:323732‑M2/55‑24 (MQ=255) cAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaa < 2:718983‑M2/134‑105 (MQ=255) ccACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaacaggtacgccct < 2:449611‑M2/134‑117 (MQ=255) cAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaat < 1:32892‑M2/63‑51 (MQ=255) cAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaat > 2:32892‑M2/1‑13 (MQ=255) cgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaacaggtacgccctgcggcactttggtcttt < 2:35362‑M2/134‑134 (MQ=255) cgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaacagg < 1:410463‑M2/109‑109 (MQ=255) cgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaacagg > 2:410463‑M2/1‑1 (MQ=255) | CAGGCGCTCCGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGC > AM260480/2912335‑2912490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |