New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 = 78029313 (0.590)3 (0.150) 3/188 1.8 22.2% coding (194/1173 nt) h16_B0694 transcriptional regulator, AraC‑family
?AM260480 = 780337 9 (0.440)coding (150/1173 nt) h16_B0694 transcriptional regulator, AraC‑family

TCGCGCATGACGCGGCGCAGCGTGCGGATCAGCGCCGCGTACTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/780155‑780293
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgcgCCACACCATTGCGATCCAGCATGTGGATCACATCCTGCTGGGCCCGCGCCGACTGGGCCACGACATTGCCGCGCTGCTGCGCCGGGCCGGGATTTCGCCGGCGCTGCTGGCCTCGCCCAATG  <  AM260480/780337‑780216
                                                                                                                                                                                                                                                                     
TCGCGCATGACGCGGCGCAGCGTGCGGATCAGCGCCGCGTACTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCG                                                                                                                                 <  2:839770/134‑1
                                                                          CAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGCCACACCATTGCGATCCAGCATGTGGATCACATCCTGCTGGGCCCGC                                                                             >  1:226656/1‑112
                                                                          CAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGCCACACCATTGCGATCCAGCATGTGGATCACATCCTGCTGGGCCCGC                                                                             <  2:226656/112‑1
                                                                                                                               CCAGTCGGCGCGCCACACCATTGCGATCCAGCATGTGGATCACATCCTGCTGGGCCCGCGCCGACTGGGCCACGACATTGCCGCGCTGCTGCGCCGGGCCGGGATTTCGCCGGCGCTGCTGGCCTCGCCCAATG  >  1:311195/1‑134
                                                                                                                                                                                                                                                                     
TCGCGCATGACGCGGCGCAGCGTGCGGATCAGCGCCGCGTACTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/780155‑780293
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgcgCCACACCATTGCGATCCAGCATGTGGATCACATCCTGCTGGGCCCGCGCCGACTGGGCCACGACATTGCCGCGCTGCTGCGCCGGGCCGGGATTTCGCCGGCGCTGCTGGCCTCGCCCAATG  <  AM260480/780337‑780216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.