New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 780293	13 (0.590)	3 (0.150)	3/188	1.8	22.2%	coding (194/1173 nt)	h16_B0694	transcriptional regulator, AraC‑family
	?	AM260480	= 780337	9 (0.440)					coding (150/1173 nt)	h16_B0694	transcriptional regulator, AraC‑family

TCGCGCATGACGCGGCGCAGCGTGCGGATCAGCGCCGCGTACTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/780155‑780293 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgcgCCACACCATTGCGATCCAGCATGTGGATCACATCCTGCTGGGCCCGCGCCGACTGGGCCACGACATTGCCGCGCTGCTGCGCCGGGCCGGGATTTCGCCGGCGCTGCTGGCCTCGCCCAATG  <  AM260480/780337‑780216                                                                                                                                                                                                                                                                       TCGCGCATGACGCGGCGCAGCGTGCGGATCAGCGCCGCGTACTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCG                                                                                                                                 <  2:839770/134‑1                                                                           CAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGCCACACCATTGCGATCCAGCATGTGGATCACATCCTGCTGGGCCCGC                                                                             >  1:226656/1‑112                                                                           CAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGCCACACCATTGCGATCCAGCATGTGGATCACATCCTGCTGGGCCCGC                                                                             <  2:226656/112‑1                                                                                                                                CCAGTCGGCGCGCCACACCATTGCGATCCAGCATGTGGATCACATCCTGCTGGGCCCGCGCCGACTGGGCCACGACATTGCCGCGCTGCTGCGCCGGGCCGGGATTTCGCCGGCGCTGCTGGCCTCGCCCAATG  >  1:311195/1‑134                                                                                                                                                                                                                                                                       TCGCGCATGACGCGGCGCAGCGTGCGGATCAGCGCCGCGTACTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/780155‑780293 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgcgCCACACCATTGCGATCCAGCATGTGGATCACATCCTGCTGGGCCCGCGCCGACTGGGCCACGACATTGCCGCGCTGCTGCGCCGGGCCGGGATTTCGCCGGCGCTGCTGGCCTCGCCCAATG  <  AM260480/780337‑780216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.