New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 780293	13 (0.590)	3 (0.150)	3/188	1.8	22.2%	coding (194/1173 nt)	h16_B0694	transcriptional regulator, AraC‑family
	?	AM260480	= 780337	9 (0.440)					coding (150/1173 nt)	h16_B0694	transcriptional regulator, AraC‑family

CGCGGCGCAGCGTGCGGATCAGCGCCGCGTACTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTGCGGCCCGGGACACGGCCGTGCCCGGGCGCCGGCGGC  >  AM260480/780165‑780415                                                                                                                                 |                                                                                                                           cgcgGCGCAGCGTGCGGATCAGCGCCGCGTACTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGccc                                                                                                                       <  1:499050/134‑1 (MQ=255)               cGGATCAGCGCCGCGTACTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATc                                                                                                         >  1:346212/1‑134 (MQ=255)                     aGCGCCGCGTACTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACAt                                                                                                    <  1:504616/133‑1 (MQ=255)                                cTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCaa                                                                                        >  2:311195/1‑134 (MQ=255)                                     ccTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGgtg                                                                                   <  2:694582/134‑1 (MQ=255)                                                 gcgcATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGAtgtg                                                                                                            >  2:938573/1‑97 (MQ=255)                                                 gcgcATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGAtgtg                                                                                                            <  1:938573/97‑1 (MQ=255)                                                    cATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGcgcgccgactgg                                                                    >  1:311195‑M2/1‑122 (MQ=255)                                                                 cagcagCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGccacaccattgcgatccagcatgtggatcacatcctgctgggcccgc                                                                             >  1:226656‑M1/1‑65 (MQ=255)                                                                 cagcagCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGccacaccattgcgatccagcatgtggatcacatcctgctgggcccgc                                                                             <  2:226656‑M1/112‑48 (MQ=255)                                                                   gcagcGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGcc                                                                                                                        <  1:86763/67‑1 (MQ=255)                                                                   gcagcGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGcc                                                                                                                        >  2:86763/1‑67 (MQ=255)                                                                              gAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTc                                          <  1:1042512/134‑1 (MQ=255)                                                                                          cggcGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCca                                                                                                       <  1:813377/61‑1 (MQ=255)                                                                                          cggcGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCca                                                                                                       >  2:813377/1‑61 (MQ=255)                                                                                             cgcAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTGCGGCCCGGGac                           <  2:346212/134‑1 (MQ=255)                                                                                                                      ccAGTCGGCGCGccacaccattgcgatccagcatgtggatcacatcctgctgggcccgcgccgactgggccacgacattgccgcgctgctgcgccgggccgggatttcgccggcgctgctggcctcgcccaatg  >  1:311195‑M1/1‑12 (MQ=255)                                                                                                                               gcgGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGcgcgccgactgggccacgacattgccgcgctgctgcgccgggccgggatttcgccggcgctgctg               <  2:226656‑M2/112‑66 (MQ=255)                                                                                                                               gcgGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGcgcgccgactgggccacgacattgccgcgctgctgcgccgggccgggatttcgccggcgctgctg               >  1:226656‑M2/1‑47 (MQ=255)                                                                                                                                 |                                                                                                                           CGCGGCGCAGCGTGCGGATCAGCGCCGCGTACTGGCCCTGGGTGACGCGCGCATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTGCGGCCCGGGACACGGCCGTGCCCGGGCGCCGGCGGC  >  AM260480/780165‑780415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.