New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 780293	13 (0.590)	3 (0.150)	3/188	1.8	22.2%	coding (194/1173 nt)	h16_B0694	transcriptional regulator, AraC‑family
	?	AM260480	= 780337	9 (0.440)					coding (150/1173 nt)	h16_B0694	transcriptional regulator, AraC‑family

CATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTGCGGCCCGGGACACGGCCGTGCCCGGGCGCCGGCGGCAGTGCGCTGCCGGCGAGGTGCAGCTTGCCT  >  AM260480/780216‑780445                                                                                                                          |                                                                                                             cATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGcgcgccgactgg                                                                                                  >  1:311195‑M2/1‑122 (MQ=255)                           gAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTc                                                                        <  1:1042512/134‑1 (MQ=255)                                          cgcAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTGCGGCCCGGGac                                                         <  2:346212/134‑1 (MQ=255)                                                                            gcgGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGcgcgccgactgggccacgacattgccgcgctgctgcgccgggccgggatttcgccggcgctgctg                                             >  1:226656‑M2/1‑47 (MQ=255)                                                                            gcgGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGcgcgccgactgggccacgacattgccgcgctgctgcgccgggccgggatttcgccggcgctgctg                                             <  2:226656‑M2/112‑66 (MQ=255)                                                                                              gATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTg                                                                    <  1:457472/71‑1 (MQ=255)                                                                                              gATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTg                                                                    >  2:457472/1‑71 (MQ=255)                                                                                              gATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTGCg                                                                  >  1:34307/1‑73 (MQ=255)                                                                                              gATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTGCg                                                                  <  2:34307/73‑1 (MQ=255)                                                                                                  cacaTGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTGCGGCCCGGGACACGGCCGTGCCCGGGCGCCGGCGGCAGTGCGCTGCCGGCGAGGTGCAGCTTGCCt  <  2:978719/133‑1 (MQ=255)                                                                                                           gATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTGCGGCCCGGGaca                                                        >  1:780594/1‑70 (MQ=255)                                                                                                           gATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTGCGGCCCGGGaca                                                        <  2:780594/70‑1 (MQ=255)                                                                                                                          |                                                                                                             CATTGGGCGAGGCCAGCAGCGCCGGCGAAATCCCGGCCCGGCGCAGCAGCGCGGCAATGTCGTGGCCCAGTCGGCGCGGGCCCAGCAGGATGTGATCCACATGCTGGATCGCAATGGTGTGGCGCGCCGAGGCCTGCGGCGCCGTGCCGGCCGGGGCCTCGGTGCGGCCCGGGACACGGCCGTGCCCGGGCGCCGGCGGCAGTGCGCTGCCGGCGAGGTGCAGCTTGCCT  >  AM260480/780216‑780445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.