New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 1842445 =9 (0.410)4 (0.200) 4/184 1.5 41.9% coding (2275/2322 nt) h16_B1632 conserved hypothetical protein
?AM260480 1842516 = 3 (0.150)coding (2204/2322 nt) h16_B1632 conserved hypothetical protein

AGACGGCAATGCTGGAGCGGATCCGCACGGCGCTCGGCGCCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1842489‑1842445
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccaagcAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGGCCTGATACCTGAGCAAGGC  >  AM260480/1842516‑1842589
                                                                                                                       
AGACGGCAATGCTGGAGCTGATCCGCACGGCGCTCGGCGCCAAGCAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGG                     >  1:887698/1‑100
AGACGGCAATGCTGGAGCTGATCCGCACGGCGCTCGGCGCCAAGCAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGG                     <  2:887698/100‑1
      CAATGCTGGAGCGGATCCGCACGGCGCTCGGCGCCAAGCAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGGCCTGATACCTGAGCAAGGC  >  1:452461/1‑113
      CAATGCTGGAGCGGATCCGCACGGCGCTCGGCGCCAAGCAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGGCCTGATACCTGAGCAAGGC  <  2:452461/113‑1
                                                                                                                       
AGACGGCAATGCTGGAGCGGATCCGCACGGCGCTCGGCGCCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1842489‑1842445
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccaagcAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGGCCTGATACCTGAGCAAGGC  >  AM260480/1842516‑1842589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.