New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AM260480 | 1842445 = | 9 (0.410) | 4 (0.200) | 4/184 | 1.5 | 41.9% | coding (2275/2322 nt) | h16_B1632 | conserved hypothetical protein |
? | AM260480 | 1842516 = | 3 (0.150) | coding (2204/2322 nt) | h16_B1632 | conserved hypothetical protein |
AGACGGCAATGCTGGAGCGGATCCGCACGGCGCTCGGCGCCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/1842489‑1842445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccaagcAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGGCCTGATACCTGAGCAAGGC > AM260480/1842516‑1842589 AGACGGCAATGCTGGAGCTGATCCGCACGGCGCTCGGCGCCAAGCAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGG > 1:887698/1‑100 AGACGGCAATGCTGGAGCTGATCCGCACGGCGCTCGGCGCCAAGCAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGG < 2:887698/100‑1 CAATGCTGGAGCGGATCCGCACGGCGCTCGGCGCCAAGCAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGGCCTGATACCTGAGCAAGGC > 1:452461/1‑113 CAATGCTGGAGCGGATCCGCACGGCGCTCGGCGCCAAGCAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGGCCTGATACCTGAGCAAGGC < 2:452461/113‑1 AGACGGCAATGCTGGAGCGGATCCGCACGGCGCTCGGCGCCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/1842489‑1842445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccaagcAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCTGCAGCCGCTGGCGGTCGGCCTGATACCTGAGCAAGGC > AM260480/1842516‑1842589 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |