| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1842445 = | 9 (0.410) | 4 (0.200) | 4/184 | 1.5 | 41.9% | coding (2275/2322 nt) | h16_B1632 | conserved hypothetical protein |
| ? | AM260480 | 1842516 = | 3 (0.150) | coding (2204/2322 nt) | h16_B1632 | conserved hypothetical protein | |||||
GGCGTTCACGGGCTACTCCTGCGTCAGGGTCGTCGGTGTCGGTCGGCTGCGAGGCCTGTGCCAGCCGCGGCGCGCTAGGACGCGCGGGTGAGCGGCGCGGCCGCGCCGCGGACGCGTTCCGGCTTGGCGCCGAGCGCCGTGCGGATCCGCTCCAGCATTGCCGTCTGCTCGACAGTGGGCCTGGCGCCAAGCAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCT > AM260480/1842324‑1842552 | ggCGTTCACGGGCTACTCCTGCGTCAGGGTCGTCGGTGTCGGTCGGCTGCGAGGCCTGTGCCAGCCGCGGCGCGCTAGGACGCGCGGGTGAGCGGCGCGGCCGCGCCGCGGACGCGTTCCGGCTTGGCGCCg < 1:633901/132‑1 (MQ=255)ggCGTTCACGGGCTACTCCTGCGTCAGGGTCGTCGGTGTCGGTCGGCTGCGAGGCCTGTGCCAGCCGCGGCGCGCTAGGACGCGCGGGTGAGCGGCGCGGCCGCGCCGCGGACGCGTTCCGGCTTGGCGCCGAg > 2:356234/1‑134 (MQ=255) ttCACGGGCTACTCCTGCGTCAGGGTCGTCGGTGTCGGTCGGCTGCGAGGCCTGTGCCAGCCGCGGCGCGCTAGGACGCGCGGGTGAGCGGCGCGGCCGCGCCGCGGACGCGTTCCGGCTTGGCGCCGAGCGcc > 1:552182/1‑134 (MQ=255) aGGGTCGTCGGTGTCGGTCGGCTGCGAGGCCTGTGCCAGCCGCGGCGCGCTAGGACGCGCGGGTGAGCGGCGCGGCCGCGCCGCGGACGCGTTCCGGCTTGGCGCCGAGCGCCGTGCGGATCCGCTCCAGCAtt > 2:684063/1‑134 (MQ=255) gggTCGTCGGTGTCGGTCGGCTGCGAGGCCTGTGCCAGCCGCGGCGCGCTAGGACGCGCGGGTGAGCGGCGCGGCCGCGCCGCGGACGCGTTCCGGCTTGGCGCCGAGCGCCGTGCGGATCCGCTCCAGCATTg < 2:550750/134‑1 (MQ=255) gtcggtgtcggtCGGCTGCGAGGCCTGTGCCAGCCGCGGCGCGCTAGGACGCGCGGGTGAGCGGCGCGGCCGCGCCGCGGACGCGTTCCGGCTTGGCGCCGAGCGCCGTGCGGATCCGCTCCAGCATTGCCGTc < 1:230994/134‑1 (MQ=255) tcggtcggCTGCGAGGCCTGTGCCAGCCGCGGCGCGCTAGGACGCGCGGGTGAGCGGCGCGGCCGCGCCGCGGACGCGTTCCGGCTTGGCGCCGAGCGCCGTGCGGATCCGCTCCAGCATTGCCGTCTGCTCg < 1:356234/133‑1 (MQ=255) gccttgctcaggtatcaggccgaccgccagcggctgcaggcgctggcggagaagctgcgtgtcgatgagcgcctGCTTGGCGCCGAGCGCCGTGCGGATCCGCTCCAGCATTg > 1:452461‑M1/75‑113 (MQ=255) gccttgctcaggtatcaggccgaccgccagcggctgcaggcgctggcggagaagctgcgtgtcgatgagcgcctGCTTGGCGCCGAGCGCCGTGCGGATCCGCTCCAGCATTg < 2:452461‑M1/39‑1 (MQ=255) ccgaccgccagcggctgcaggcgctggcggagaagctgcgtgtcgatgagcgcctGCTTGGCGCCGAGCGCCGTGCGGATCAGCTCCAGCATTGCCGTCt > 1:887698‑M1/56‑100 (MQ=255) ccgaccgccagcggctgcaggcgctggcggagaagctgcgtgtcgatgagcgcctGCTTGGCGCCGAGCGCCGTGCGGATCAGCTCCAGCATTGCCGTCt < 2:887698‑M1/45‑1 (MQ=255) gcgcTAGGACGCGCGGGTGAGCGGCGCGGCCGCGCCGCGGACGCGTTCCGGCTTGGCGCCGAGCGCCGTGCGGATCCGCTCCAGCATTGCCGTCTGCTCGACAGTGGGCCTGGCGCCAAGCAGGCGCTCATCGa < 1:824299/134‑1 (MQ=255) cgcggcCGCGCCGCGGACGCGTTCCGGCTTGGCGCCGAGCGCCGTGCGGATCCGCTCCAGCATTGCCGTCTGCTCGACAGTGGGCCTGGCGCCAAGCAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCt < 1:684063/134‑1 (MQ=255) | GGCGTTCACGGGCTACTCCTGCGTCAGGGTCGTCGGTGTCGGTCGGCTGCGAGGCCTGTGCCAGCCGCGGCGCGCTAGGACGCGCGGGTGAGCGGCGCGGCCGCGCCGCGGACGCGTTCCGGCTTGGCGCCGAGCGCCGTGCGGATCCGCTCCAGCATTGCCGTCTGCTCGACAGTGGGCCTGGCGCCAAGCAGGCGCTCATCGACACGCAGCTTCTCCGCCAGCGCCT > AM260480/1842324‑1842552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |