| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 2311318 = | 0 (0.000) | 21 (0.940) | 17/198 | 0.3 | 100% | coding (450/462 nt) | h16_B2054 | putative transporter |
| ? | AY305378 | = 437418 | NA (NA) | noncoding (1/2 nt) | direct | target site duplication | |||||
AATTCAGCTGGAAGGGCGCGCTGCTCAACGCCGTGGTGCTGGTGCTGATCAGCCTTGGCGCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/2311424‑2311318‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttACTAACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGAATGAAATGCAAACGGAACTCGGACGGTCGAGCGATCGATCATCATGCCCTTCAGGTGATGC < AY305378/437418‑437313 AATTCAGCTGGAAGGGCGCGCTGCTCAACGCCGTGGTGCTGGTGCTGATCAGCCTTGGCGCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCAT < 1:382270/133‑1AATTCAGCTGGAAGGGCGCGCTGCTCAACGCCGTGGTGCTGGTGCTGATCAGCCTTGGCGCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCAT < 1:532470/133‑1 TTCAGCTGGAAGGGCGCGCTGCTCAACGCCGTGGTGCTGGTGCTGATCAGCCTTGGCGCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTC < 2:994354/134‑1 GCTGGTGCTGATCAGCCTTGGCGCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTC < 1:271917/80‑1 GCTGGTGCTGATCAGCCTTGGCGCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTC > 2:271917/1‑80 TGATCAGCCTTGGCGCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGAATGAAATGCAAACGGAACTCGGACGGT > 2:734318/1‑134 ATCAGCCTTGGCGCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGAATGAAATGCAAACGGAACTCGGACGGTC > 1:634490/1‑133 ATCAGCCTTGGCGCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCAT < 2:567242/91‑1 ATCAGCCTTGGCGCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCAT > 1:567242/1‑91 GCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCATGAGAC < 2:889339/84‑1 GCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCATGAGAC > 1:889339/1‑84 CATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGAATGAAATGCAAACGGAACTCGGACGGTCGAGCGATCGATCAT < 1:734318/134‑1 ATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTA > 2:995039/1‑52 ATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTA < 1:995039/52‑1 AACCTGCAGATGCCGGTGTGGCCGGCCTTTACTCACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGAATGAAATG > 2:295454/1‑83 AACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGAATGAAATG < 1:295454/83‑1 AACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGA > 1:707300/1‑75 AACCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGA < 2:707300/75‑1 CCTGCAGATGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGAATGAAATGCAAACGGAACTCGGACGGTCGAGCGATCGATCATCATGCCCTTCAGGTGATGC > 1:89420/1‑134 TGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCAT > 2:279139/1‑51 TGCCGGTGTGGCCGGCCTTTACTAACCTTCTCGAAAGTATTGTCATGTCAT < 1:279139/51‑1 TACTAACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGAATGAAATGCAAACGGAACTCGGACGGTCGAGCGATCGATC < 2:407052/86‑1 TACTAACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGAATGAAATGCAAACGGAACTCGGACGGTCGAGCGATCGATC > 1:407052/1‑86 AATTCAGCTGGAAGGGCGCGCTGCTCAACGCCGTGGTGCTGGTGCTGATCAGCCTTGGCGCATTCGTCTACGGCATCAACCTGCAGATGCCGGTGTGGCCGGCCTTTa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/2311424‑2311318‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttACTAACCTTCTCGAAAGTATTGTCATGTCATGAGACAATACGGGAATGAAATGCAAACGGAACTCGGACGGTCGAGCGATCGATCATCATGCCCTTCAGGTGATGC < AY305378/437418‑437313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |