New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 2311318 =0 (0.000)21 (0.940) 17/198 0.3 100% coding (450/462 nt) h16_B2054 putative transporter
?AY305378 = 437418 NA (NA)noncoding (1/2 nt) direct target site duplication

CGCAGCCCAGGAAGGCGTAGGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATCAGCACCAGCACCACGGCGTTGAGCAGCGCGCCCTTCCAGCTGAATT  >  AM260480/2311212‑2311424
                                                                                                          |                                                                                                          
gcatcacctgaagggcatgatgatcgatcgctcgaccgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAgg                                                                                 >  1:89420‑M1/107‑134 (MQ=255)
                   atgatcgatcgctcgaccgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATg                                                              <  1:734318‑M1/47‑1 (MQ=255)
                     gatcgatcgctcgaccgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagta                                                                                                            >  1:407052‑M1/86‑86 (MQ=255)
                     gatcgatcgctcgaccgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagta                                                                                                            <  2:407052‑M1/1‑1 (MQ=255)
                                 gaccgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGAt                                                 >  1:634490‑M1/74‑133 (MQ=255)
                                  accgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATca                                               >  2:734318‑M1/73‑134 (MQ=255)
                                                     catttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGtt                                                                               <  1:295454‑M1/30‑1 (MQ=255)
                                                     catttcattcccgtattgtctcatgacatgacaatactttcgagaaggtgagtAAAGGCCGGCCACACCGGCATCTGCAGGtt                                                                               >  2:295454‑M1/54‑83 (MQ=255)
                                                             tcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGtt                                                                               <  2:707300‑M1/30‑1 (MQ=255)
                                                             tcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGtt                                                                               >  1:707300‑M1/46‑75 (MQ=255)
                                                                      gtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATgc                                                             <  2:889339‑M1/48‑1 (MQ=255)
                                                                      gtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATgc                                                             >  1:889339‑M1/37‑84 (MQ=255)
                                                                           atgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCa                                                                                         <  1:279139‑M1/20‑1 (MQ=255)
                                                                           atgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCa                                                                                         >  2:279139‑M1/32‑51 (MQ=255)
                                                                           atgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGAt                                                 >  1:567242‑M1/32‑91 (MQ=255)
                                                                           atgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGAt                                                 <  2:567242‑M1/60‑1 (MQ=255)
                                                                             gacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATCAGCACCAGCACCACGGCGTTGAGCAGCGCGCCCTTCCAGCTGaa    <  2:994354‑M1/105‑1 (MQ=255)
                                                                                atgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATCAGCACCAGCACCACGGCGTTGAGCAGCGCGCCCTTCCAGCTGAAtt  <  1:532470‑M1/107‑1 (MQ=255)
                                                                                atgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATCAGCACCAGCACCACGGCGTTGAGCAGCGCGCCCTTCCAGCTGAAtt  <  1:382270‑M1/107‑1 (MQ=255)
                                                                                       tactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGAt                                                                            <  1:995039‑M1/33‑1 (MQ=255)
                                                                                       tactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGAt                                                                            >  2:995039‑M1/20‑52 (MQ=255)
                                                                                                gaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATcagcaccagc                                       >  2:271917‑M1/11‑80 (MQ=255)
                                                                                                gaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATcagcaccagc                                       <  1:271917‑M1/70‑1 (MQ=255)
                                                                                                          |                                                                                                          
CGCAGCCCAGGAAGGCGTAGGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATCAGCACCAGCACCACGGCGTTGAGCAGCGCGCCCTTCCAGCTGAATT  >  AM260480/2311212‑2311424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.