New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	2311318 =	0 (0.000)	21 (0.940)	17/198	0.3	100%	coding (450/462 nt)	h16_B2054	putative transporter
	?	AY305378	= 437418	NA (NA)					noncoding (1/2 nt)	direct	target site duplication

CGCAGCCCAGGAAGGCGTAGGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATCAGCACCAGCACCACGGCGTTGAGCAGCGCGCCCTTCCAGCTGAATT  >  AM260480/2311212‑2311424                                                                                                           |                                                                                                           gcatcacctgaagggcatgatgatcgatcgctcgaccgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAgg                                                                                 >  1:89420‑M1/107‑134 (MQ=255)                    atgatcgatcgctcgaccgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATg                                                              <  1:734318‑M1/47‑1 (MQ=255)                      gatcgatcgctcgaccgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagta                                                                                                            >  1:407052‑M1/86‑86 (MQ=255)                      gatcgatcgctcgaccgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagta                                                                                                            <  2:407052‑M1/1‑1 (MQ=255)                                  gaccgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGAt                                                 >  1:634490‑M1/74‑133 (MQ=255)                                   accgtccgagttccgtttgcatttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATca                                               >  2:734318‑M1/73‑134 (MQ=255)                                                      catttcattcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGtt                                                                               <  1:295454‑M1/30‑1 (MQ=255)                                                      catttcattcccgtattgtctcatgacatgacaatactttcgagaaggtgagtAAAGGCCGGCCACACCGGCATCTGCAGGtt                                                                               >  2:295454‑M1/54‑83 (MQ=255)                                                              tcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGtt                                                                               <  2:707300‑M1/30‑1 (MQ=255)                                                              tcccgtattgtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGtt                                                                               >  1:707300‑M1/46‑75 (MQ=255)                                                                       gtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATgc                                                             <  2:889339‑M1/48‑1 (MQ=255)                                                                       gtctcatgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATgc                                                             >  1:889339‑M1/37‑84 (MQ=255)                                                                            atgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCa                                                                                         <  1:279139‑M1/20‑1 (MQ=255)                                                                            atgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCa                                                                                         >  2:279139‑M1/32‑51 (MQ=255)                                                                            atgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGAt                                                 >  1:567242‑M1/32‑91 (MQ=255)                                                                            atgacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGAt                                                 <  2:567242‑M1/60‑1 (MQ=255)                                                                              gacatgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATCAGCACCAGCACCACGGCGTTGAGCAGCGCGCCCTTCCAGCTGaa    <  2:994354‑M1/105‑1 (MQ=255)                                                                                 atgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATCAGCACCAGCACCACGGCGTTGAGCAGCGCGCCCTTCCAGCTGAAtt  <  1:532470‑M1/107‑1 (MQ=255)                                                                                 atgacaatactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATCAGCACCAGCACCACGGCGTTGAGCAGCGCGCCCTTCCAGCTGAAtt  <  1:382270‑M1/107‑1 (MQ=255)                                                                                        tactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGAt                                                                            <  1:995039‑M1/33‑1 (MQ=255)                                                                                        tactttcgagaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGAt                                                                            >  2:995039‑M1/20‑52 (MQ=255)                                                                                                 gaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATcagcaccagc                                       >  2:271917‑M1/11‑80 (MQ=255)                                                                                                 gaaggttagtAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATcagcaccagc                                       <  1:271917‑M1/70‑1 (MQ=255)                                                                                                           |                                                                                                           CGCAGCCCAGGAAGGCGTAGGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATAAAGGCCGGCCACACCGGCATCTGCAGGTTGATGCCGTAGACGAATGCGCCAAGGCTGATCAGCACCAGCACCACGGCGTTGAGCAGCGCGCCCTTCCAGCTGAATT  >  AM260480/2311212‑2311424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.