New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 3596842	9 (0.360)	4 (0.170)	4/188	1.8	31.6%	coding (128/279 nt)	acyP	Acylphosphatase
	?	AM260479	= 3596844	9 (0.390)					coding (126/279 nt)	acyP	Acylphosphatase

CCCCAGGCCCGACCTCGACCAGCGTCACCTGCGCGGCCGGCGGGCCCTGTTCCATCCACGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGCCGTCGAGCCGGTTGCGCACCCAGCCGCCAAGCTCAAGGTCGTCCGCCGCGTCGGCGCAGGCGGCGCGGTAGCCCACGCCCTGCACGCGCCCATGCGCGACCAGGCGCCAGGT  >  AM260479/3596732‑3596957                                                                                                                 |                                                                                                                  ccccAGGCCCGACCTCGACCAGCGTCACCTGCGCGGCCGGCGGGCCCTGTTCCATCCACGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGCCGTCGAGCCGGTTGCGCAc                                                                                               <  2:38306/133‑1 (MQ=255)          cGACCTCGACCAGCGTCACCTGCGCGGCCGGCGGGCCCTGTTCCATCCACGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGccgtcgaggtgatggcgcac                                                                                               <  1:481867‑M2/124‑21 (MQ=255)          cGACCTCGACCAGCGTCACCTGCGCGGCCGGCGGGCCCTGTTCCATCCACGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGccgtcgaggtgatggcgcac                                                                                               >  2:481867‑M2/1‑104 (MQ=255)          cGACCTCGACCAGCGTCACCTGCGCGGCCGGCGGGCCCTGTTCCATCCACGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGccgtc                                                                                                              <  1:365779‑M2/109‑6 (MQ=255)          cGACCTCGACCAGCGTCACCTGCGCGGCCGGCGGGCCCTGTTCCATCCACGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGccgtc                                                                                                              >  2:365779‑M2/1‑104 (MQ=255)           gACCTCGACCAGCGTCACCTGCGCGGCCGGCGGGCCCTGTTCCATCCACGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGccgtc                                                                                                              >  2:949877‑M2/1‑103 (MQ=255)           gACCTCGACCAGCGTCACCTGCGCGGCCGGCGGGCCCTGTTCCATCCACGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGccgtc                                                                                                              <  1:949877‑M2/108‑6 (MQ=255)                                        gcggGCCCTGTTCCATCCACGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGCCGTCGAGCCGGTTGCGCACCCAGCCGCCAAGCTCAAGGTCGTCCGCCGCGTCGGCGCAg                                                       <  2:39963/134‑1 (MQ=255)                                                  ttCCATCCACGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGCCGTCGAGCCGGTTGCGCACCCAGCCGCCAAGCTCAAGGTCGTCCGCCGCGTCGGCGCAGGCGGCGCGGt                                             <  1:1026030/134‑1 (MQ=255)                                                          aCGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGCCGTCGAGCCGGTTGCGCACCCAGCCGCCAAGCTCAAGGTCGTCCGCCGCGTCGGCGCAGGCGGCGCGGTAGCCCACg                                     >  2:760596/1‑134 (MQ=255)                                                                   gggCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGCCGTCGAGCCGGTTGCGCACCCAGCCGCCAAGCTCAAGGTCGTCCGCCGCGTCGGCGCAGGCGGCGCGGTAGCCCACGCCCTGCAcg                            <  2:37839/134‑1 (MQ=255)                                                                            gCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGCCGTCGAGCCGGTTGCGCACCCAgc                                                                                          <  1:579633/63‑1 (MQ=255)                                                                            gCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGCCGTCGAGCCGGTTGCGCACCCAgc                                                                                          >  2:579633/1‑63 (MQ=255)                                                                             cTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGccgtcgaggtgatggcgcacggcacggtcaggcagctcgaagccctgcaggcgtggatggaacagggcccgccggc                                       <  1:870010‑M2/113‑77 (MQ=255)                                                                             cTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGccgtcgaggtgatggcgcacggcacggtcaggcagctcgaagccctgcaggcgtggatggaacagggcccgccggc                                       >  2:870010‑M2/1‑37 (MQ=255)                                                                                                 ccATCACCTCGACGGTGCCGTCGAGCCGGTTGCGCACCCAGCCGCCAAGCTCAAGGTCGTCCGCCGCGTCGGCGCAGGCGGCGCGGTAGCCCACGCCCTGCACGCGCCCATGCGCGACCAGGCGCCAGGt  >  1:580732/1‑130 (MQ=255)                                                                                                 ccATCACCTCGACGGTGCCGTCGAGCCGGTTGCGCACCCAGCCGCCAAGCTCAAGGTCGTCCGCCGCGTCGGCGCAGGCGGCGCGGTAGCCCACGCCCTGCACGCGCCCATGCGCGACCAGGCGCCAGGt  <  2:580732/130‑1 (MQ=255)                                                                                                                 |                                                                                                                  CCCCAGGCCCGACCTCGACCAGCGTCACCTGCGCGGCCGGCGGGCCCTGTTCCATCCACGCCTGCAGGGCTTCGAGCTGCCTGACCGTGCCGTGCGCCATCACCTCGACGGTGCCGTCGAGCCGGTTGCGCACCCAGCCGCCAAGCTCAAGGTCGTCCGCCGCGTCGGCGCAGGCGGCGCGGTAGCCCACGCCCTGCACGCGCCCATGCGCGACCAGGCGCCAGGT  >  AM260479/3596732‑3596957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.