New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 = 289994315 (0.680)3 (0.150) 3/186 1.8 20.2% coding (553/1281 nt) h16_B2569 Putative MFS transporter
?AM260480 = 2899965 10 (0.500)coding (531/1281 nt) h16_B2569 Putative MFS transporter

GCGTGATGCCGCTGACCAGCACGGCGGCAATGGCAAAGAGCGTGGCACTCAGCCCGTAGACCACGCCCGGCCCGGCCACGTAGGCAAAGCCACCAATTGCCGGGCCGATGATGATGGCGGCCTGCCCGGCGGAGCTGGCCAGCGCCACCGCGCGCGGCAGCTGGCGCGGCGTCACCACGCTGGGCAGCAGCGCCTGCAGCGTGGGGGTCTCGAACGCGCGCGTGGCGCCGA  >  AM260480/2899868‑2900098
                                                                                                 |                                                                                                                                     
gCGTGATGCCGCTGACCAGCACGGCGGCAATGGCAAAGAGCGTGGCACTCAGCCCGTAGACCACGCCCGGCCCGGCCACGTAGGCAAAGCCACCAATTgccgggccgggcgtggtctacgggctgagtgccacg                                                                                                   >  2:653580‑M2/1‑98 (MQ=255)
     aTGCCGCTGACCAGCACGGCGGCAATGGCAAAGAGCGTGGCACTCAGCCCGTAGACCACGCCCGGCCCGGCCACGTAGGCAAAGCCACCAATTgccgg                                                                                                                                  <  1:442695‑M2/98‑6 (MQ=255)
     aTGCCGCTGACCAGCACGGCGGCAATGGCAAAGAGCGTGGCACTCAGCCCGTAGACCACGCCCGGCCCGGCCACGTAGGCAAAGCCACCAATTgccgg                                                                                                                                  >  2:442695‑M2/1‑93 (MQ=255)
                            aaTGGCAAAGAGCGTGGCACTCAGCCCGTAGACCACGCCCGGCCCGGCCACGTAGGCAAAGCCACCAATTGCCGGGCCGATGATGATGGCGGCCTGCCCGGCGGAGCTGGCCAGCGCCACCGCGCGCGGCAGCt                                                                       >  2:252955/1‑134 (MQ=255)
                                gCAAAGAGCGTGGCACTCAGCCCGTAGACCACGCCCGGCCCGGCCACGTAGGCAAAGCCACCAATTGCCGGGCCGATGATGATGGCGGCCTGCCCGGCGGAGCTGGCCAGCGCCACCGCGCGCGGCAGCTGgc                                                                    <  1:252955/133‑1 (MQ=255)
                                                        tAGACCACGCCCGGCCCGGCCACGTAGGCAAAGCCACCAATTGCCGGGCCGATGATGATGGCGGCCTGCCCGGCGGAGCTGGCCAGCGCCACCGCGCGCGGCAGCTGGCGCGGCGTCACCACGCTGGGcagcag                                           >  1:836736/1‑134 (MQ=255)
                                                                  ccggcccggcCACGTAGGCAAAGCCACCAATTGCCGGGCCgatgat                                                                                                                         >  1:341985/1‑46 (MQ=255)
                                                                  ccggcccggcCACGTAGGCAAAGCCACCAATTGCCGGGCCgatgat                                                                                                                         <  2:341985/46‑1 (MQ=255)
                                                                  ccggcccggcCACGTAGGCAAAGCCACCAATTGCCGGGCCGATGATGATGGCGGCCTGCCCGGCGGAGCTGGCCAGCGCCACCGCGCGCGGCAGCTGGCGCGGCGTCACCACGCTGGGCAGCAGCGCCTGCAGc                                 >  2:786316/1‑134 (MQ=255)
                                                                   cggcccggccACGTAGGCAAAGCCACCAATTGCCGGGCCGATGATGATGGCGGCCTGCCCGGCGGAGCTGGCCAGCGCCACCGCGCGCGGCAGCTGGCGCGGCGTCACCACGCTGGGCAGCAGCGCCTGCAGCg                                >  1:249111/1‑134 (MQ=255)
                                                                   cggcccggccACGTAGGCAAAGCCACCAATTGCCGGGCCGATGATGATGGCGGCCTGCCCGGCGGAGCTGGCCAGCGCCACCGCGCGCGGCAGCTGGCGCGGCGTCACCACGCTGGGCAGCAGCGCCTGCAGCg                                <  1:786316/134‑1 (MQ=255)
                                                                      cccggccACGTAGGCAAAGCCACCAATTgccgggc                                                                                                                                <  2:858920‑M2/35‑8 (MQ=255)
                                                                      cccggccACGTAGGCAAAGCCACCAATTgccgggc                                                                                                                                >  1:858920‑M2/1‑28 (MQ=255)
                                                                          gccACGTAGGCAAAGCCACCAATTgccgggccgggcgtggtctacgggctgagtgccacgctctttgccattgccgccgtgctgg                                                                          <  2:411333‑M2/85‑62 (MQ=255)
                                                                          gccACGTAGGCAAAGCCACCAATTgccgggccgggcgtggtctacgggctgagtgccacgctctttgccattgccgccgtgctgg                                                                          >  1:411333‑M2/1‑24 (MQ=255)
                                                                                    cAAAGCCACCAATTGCCGGGCCGATGATGATGGCGGCCTGCCCGGCGGAGCTGGCCAGCGCCACCGCGCGCGGCAGCTGGCGCGGCGTCACCACGCTGGGCAGCAGCGCCTGCAGCGTGGGGGTCTCGAAcgcg               <  2:836736/134‑1 (MQ=255)
                                                                                                 tGCCGGGCCGATGATGATGGCGGCCTGCCCGGCGGAGCTGGCCAGCGCCACCGCGCGCGGCAGCTGGCGCGGCGTCACCACGCTGGGCAGCAGCGCCTGCAGCGTGGGGGTCTCGAACGCGCGCGTGGCGCCGa  >  1:847626/1‑134 (MQ=255)
                                                                                                 |                                                                                                                                     
GCGTGATGCCGCTGACCAGCACGGCGGCAATGGCAAAGAGCGTGGCACTCAGCCCGTAGACCACGCCCGGCCCGGCCACGTAGGCAAAGCCACCAATTGCCGGGCCGATGATGATGGCGGCCTGCCCGGCGGAGCTGGCCAGCGCCACCGCGCGCGGCAGCTGGCGCGGCGTCACCACGCTGGGCAGCAGCGCCTGCAGCGTGGGGGTCTCGAACGCGCGCGTGGCGCCGA  >  AM260480/2899868‑2900098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.