New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 560221	12 (0.440)	4 (0.160)	3/198	2.3	27.4%	coding (271/1047 nt)	h16_A0532	conserved hypothetical protein
	?	AM260479	= 560248	10 (0.390)					coding (298/1047 nt)	h16_A0532	conserved hypothetical protein

CGTCTGGCAGCTGGGCATCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/560088‑560221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccgCGCCCGGTGCCAGCACCATGGCCGGCACGGCCGGGATCTCGGCATCGGCCAGTTGCTGCACGAAGGCGTGTTCTTCCAGGATGGCCGCATCGGTCCAGCGGCCCGGACGGTAGAACTTGGCGATGACCG  <  AM260479/560248‑560120                                                                                                                                                                                                                                                                         CGTCTGGCAGCTGGGCATCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCG                                                                                                                                   <  1:644843/134‑1                        ATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGCGCCCGGTGCCAGCACCATGGCC                                                                                                            <  2:417579/134‑1                                                                            GGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCC                                                                                                                                    >  1:832627/1‑58                                                                            GGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCC                                                                                                                                    <  2:832627/58‑1                                                                                 TCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGCGCCCGGTGCCAGCACCATGGCC                                                                                                            <  1:594694/77‑1                                                                                 TCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGCGCCCGGTGCCAGCACCATGGCC                                                                                                            >  2:594694/1‑77                                                                                                                 GCCGATGCCGAGATCCCGGCCGCGCCCGGTGCCAGCACCATGGCCGGCACGGCCGGGATCTCGGCATCGGCCAGTTGCTGCACGAAGGCGTGTTCTTCCAGGATGGCCGCATCGGTCCAGCGGCCCGGACGG                     >  1:130219/1‑132                                                                                                                                CCGGCCGCGCCCGGTGCCAGCACCATGGCCGGCACGGCCGGGATCTCGGCATCGGCCAGTTGCTGCACGAAGGCGTGTTCTTCCAGGATGGCCGCATCGGTCCAGCGGCCCGGACGGTAGAACTTGGCGATGA     <  1:632621/133‑1                                                                                                                                  GGCCGCGCCCGGTGCCAGCACCATGGCCGGCACGGCCGGGATCTCGGCATCGGCCAGTTGCTGCACGAAGGCGTGTTCTTCCAGGATGGCCGCATCGGTCCAGCGGCCCGGACGGTAGAACTTGGCGATGACCG  >  2:814331/1‑134                                                                                                                                                                                                                                                                         CGTCTGGCAGCTGGGCATCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/560088‑560221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccgCGCCCGGTGCCAGCACCATGGCCGGCACGGCCGGGATCTCGGCATCGGCCAGTTGCTGCACGAAGGCGTGTTCTTCCAGGATGGCCGCATCGGTCCAGCGGCCCGGACGGTAGAACTTGGCGATGACCG  <  AM260479/560248‑560120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.