New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 560221	12 (0.440)	4 (0.160)	3/198	2.3	27.4%	coding (271/1047 nt)	h16_A0532	conserved hypothetical protein
	?	AM260479	= 560248	10 (0.390)					coding (298/1047 nt)	h16_A0532	conserved hypothetical protein

CGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCTGCGGCGGCCGCGAGCCGGCGCTGGACCGTTCCGACACGCTGACCTGGCTCGGCCGCTTCATCGGCCGCATC  >  AM260479/560120‑560373                                                                                                                                 |                                                                                                                              cGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGcggcc                                                                                                                          >  2:814331‑M2/1‑129 (MQ=255)    tCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGcggccgg                                                                                                                        <  1:632621‑M2/133‑8 (MQ=255)                    ccGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGcggccgggatctcggcatcggc                                                                                                         >  1:130219‑M2/1‑110 (MQ=255)                                                      gaagaaCACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCt                                                                         >  1:520040/1‑130 (MQ=255)                                                      gaagaaCACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCt                                                                         <  2:520040/130‑1 (MQ=255)                                                                                                           ggCCATGGTGCTGGCACCGGGCGcggccgggatctcggcatcggccagttgctgcacgaaggcgtgttcttccaggatggccgcatcggtccagcggcccggacggtagaacttggcgatgaccggcgcggcat                <  2:417579‑M2/134‑112 (MQ=255)                                                                                                           ggCCATGGTGCTGGCACCGGGCGcggccgggatctcggcatcggccagttgctgcacgaaggcgtgttcttccagga                                                                         <  1:594694‑M2/77‑55 (MQ=255)                                                                                                           ggCCATGGTGCTGGCACCGGGCGcggccgggatctcggcatcggccagttgctgcacgaaggcgtgttcttccagga                                                                         >  2:594694‑M2/1‑23 (MQ=255)                                                                                                           ggCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCTGCGGCGGCCGCGAGCCGGCGCTGGACCGTTCCGACACGCTGACCTGGCTCGGCCGCt                >  1:862568/1‑134 (MQ=255)                                                                                                            gCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCa                                                                                                         >  1:918747/1‑44 (MQ=255)                                                                                                            gCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCa                                                                                                         <  2:918747/44‑1 (MQ=255)                                                                                                                          aCCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCTGCGGCGGCCGCGAGCCGGCGCTGGACCGTTCCGACACGCTGACCTGGCTCGGCCGCTTCATCGGCCGCATc  >  1:951483/1‑133 (MQ=255)                                                                                                                                 gcgGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTc                                                                                         <  1:910958/39‑1 (MQ=255)                                                                                                                                 gcgGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTc                                                                                         >  2:910958/1‑39 (MQ=255)                                                                                                                                 gcgGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCTGCGGCGGCCGCGAGCCGGCGCTGGACCGt                                            <  1:237993/84‑1 (MQ=255)                                                                                                                                 gcgGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCTGCGGCGGCCGCGAGCCGGCGCTGGACCGt                                            >  2:237993/1‑84 (MQ=255)                                                                                                                                 |                                                                                                                              CGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCTGCGGCGGCCGCGAGCCGGCGCTGGACCGTTCCGACACGCTGACCTGGCTCGGCCGCTTCATCGGCCGCATC  >  AM260479/560120‑560373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.