New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 560221	12 (0.440)	4 (0.160)	3/198	2.3	27.4%	coding (271/1047 nt)	h16_A0532	conserved hypothetical protein
	?	AM260479	= 560248	10 (0.390)					coding (298/1047 nt)	h16_A0532	conserved hypothetical protein

CGTCTGGCAGCTGGGCATCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCTGCGGCGGCCGCGAGCCGGCGCTGGACCGTTCCGACACGCTGACCTGGC  >  AM260479/560088‑560350                                                                                                                                      |                                                                                                                                  cgTCTGGCAGCTGGGCATCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCG                                                                                                                                   <  1:644843‑M1/134‑1 (MQ=255)   tCTGGCAGCTGGGCATCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTg                                                                                                                                 >  2:130219/1‑134 (MQ=255)                 aTCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCt                                                                                                                   <  1:460667/134‑1 (MQ=255)                        aTGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGcgcccggtgccagcaccatggcc                                                                                                            <  2:417579‑M1/134‑24 (MQ=255)                                 cGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGcggcc                                                                                                   >  2:814331‑M2/1‑129 (MQ=255)                                    tCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGcggccgg                                                                                                 <  1:632621‑M2/133‑8 (MQ=255)                                                    ccGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGcggccgggatctcggcatcggc                                                                                  >  1:130219‑M2/1‑110 (MQ=255)                                                                     ccGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCgg                                                                                                                             >  2:72631/1‑72 (MQ=255)                                                                     ccGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCgg                                                                                                                             <  1:72631/72‑1 (MQ=255)                                                                            ggCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGACCGTGCCgg                                                                                                                             <  2:83820/65‑1 (MQ=255)                                                                            ggCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGACCGTGCCgg                                                                                                                             >  1:83820/1‑65 (MQ=255)                                                                             gCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCgg                                                                                                                             <  1:784544/64‑1 (MQ=255)                                                                             gCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCgg                                                                                                                             >  2:784544/1‑64 (MQ=255)                                                                                 tCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGcgcccggtgccagcaccatggcc                                                                                                            <  1:594694‑M1/77‑24 (MQ=255)                                                                                 tCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGcgcccggtgccagcaccatggcc                                                                                                            >  2:594694‑M1/1‑54 (MQ=255)                                                                                      gaagaaCACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCt                                                  <  2:520040/130‑1 (MQ=255)                                                                                      gaagaaCACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCt                                                  >  1:520040/1‑130 (MQ=255)                                                                                                ccTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCg                                                                                                            <  2:333969/62‑1 (MQ=255)                                                                                                ccTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCg                                                                                                            >  1:333969/1‑62 (MQ=255)                                                                                                                 gCCGATGCCGAGATCCCGGCCGcgcccggtgccagcaccatggccggcacggccgggatctcggcatcggccagttgctgcacgaaggcgtgttcttccaggatggccgcatcggtccagcggcccggacgg                     >  1:130219‑M1/1‑22 (MQ=255)                                                                                                                                ccGGCCGcgcccggtgccagcaccatggccggcacggccgggatctcggcatcggccagttgctgcacgaaggcgtgttcttccaggatggccgcatcggtccagcggcccggacggtagaacttggcgatga     <  1:632621‑M1/133‑127 (MQ=255)                                                                                                                                  ggCCGcgcccggtgccagcaccatggccggcacggccgggatctcggcatcggccagttgctgcacgaaggcgtgttcttccaggatggccgcatcggtccagcggcccggacggtagaacttggcgatgaccg  >  2:814331‑M1/1‑5 (MQ=255)                                                                                                                                      |                                                                                                                                  CGTCTGGCAGCTGGGCATCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCTGCGGCGGCCGCGAGCCGGCGCTGGACCGTTCCGACACGCTGACCTGGC  >  AM260479/560088‑560350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.