New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 56022112 (0.440)4 (0.160) 3/198 2.3 27.4% coding (271/1047 nt) h16_A0532 conserved hypothetical protein
?AM260479 = 560248 10 (0.390)coding (298/1047 nt) h16_A0532 conserved hypothetical protein

CGTCTGGCAGCTGGGCATCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCTGCGGCGGCCGCGAGCCGGCGCTGGACCGTTCCGACACGCTGACCTGGC  >  AM260479/560088‑560350
                                                                                                                                     |                                                                                                                                 
cgTCTGGCAGCTGGGCATCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCG                                                                                                                                   <  1:644843‑M1/134‑1 (MQ=255)
  tCTGGCAGCTGGGCATCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTg                                                                                                                                 >  2:130219/1‑134 (MQ=255)
                aTCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCt                                                                                                                   <  1:460667/134‑1 (MQ=255)
                       aTGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGcgcccggtgccagcaccatggcc                                                                                                            <  2:417579‑M1/134‑24 (MQ=255)
                                cGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGcggcc                                                                                                   >  2:814331‑M2/1‑129 (MQ=255)
                                   tCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGcggccgg                                                                                                 <  1:632621‑M2/133‑8 (MQ=255)
                                                   ccGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGcggccgggatctcggcatcggc                                                                                  >  1:130219‑M2/1‑110 (MQ=255)
                                                                    ccGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCgg                                                                                                                             >  2:72631/1‑72 (MQ=255)
                                                                    ccGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCgg                                                                                                                             <  1:72631/72‑1 (MQ=255)
                                                                           ggCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGACCGTGCCgg                                                                                                                             <  2:83820/65‑1 (MQ=255)
                                                                           ggCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGACCGTGCCgg                                                                                                                             >  1:83820/1‑65 (MQ=255)
                                                                            gCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCgg                                                                                                                             <  1:784544/64‑1 (MQ=255)
                                                                            gCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCgg                                                                                                                             >  2:784544/1‑64 (MQ=255)
                                                                                tCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGcgcccggtgccagcaccatggcc                                                                                                            <  1:594694‑M1/77‑24 (MQ=255)
                                                                                tCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGcgcccggtgccagcaccatggcc                                                                                                            >  2:594694‑M1/1‑54 (MQ=255)
                                                                                     gaagaaCACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCt                                                  <  2:520040/130‑1 (MQ=255)
                                                                                     gaagaaCACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCt                                                  >  1:520040/1‑130 (MQ=255)
                                                                                               ccTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCg                                                                                                            <  2:333969/62‑1 (MQ=255)
                                                                                               ccTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCg                                                                                                            >  1:333969/1‑62 (MQ=255)
                                                                                                                gCCGATGCCGAGATCCCGGCCGcgcccggtgccagcaccatggccggcacggccgggatctcggcatcggccagttgctgcacgaaggcgtgttcttccaggatggccgcatcggtccagcggcccggacgg                     >  1:130219‑M1/1‑22 (MQ=255)
                                                                                                                               ccGGCCGcgcccggtgccagcaccatggccggcacggccgggatctcggcatcggccagttgctgcacgaaggcgtgttcttccaggatggccgcatcggtccagcggcccggacggtagaacttggcgatga     <  1:632621‑M1/133‑127 (MQ=255)
                                                                                                                                 ggCCGcgcccggtgccagcaccatggccggcacggccgggatctcggcatcggccagttgctgcacgaaggcgtgttcttccaggatggccgcatcggtccagcggcccggacggtagaacttggcgatgaccg  >  2:814331‑M1/1‑5 (MQ=255)
                                                                                                                                     |                                                                                                                                 
CGTCTGGCAGCTGGGCATCGAAGATGCCGCGCCGGTCATCGCCAAGTTCTACCGTCCGGGCCGCTGGACCGATGCGGCCATCCTGGAAGAACACGCCTTCGTGCAGCAACTGGCCGATGCCGAGATCCCGGCCGTGCCGGCCATGGTGCTGGCACCGGGCGCGGCCGGCACGCTGCTGCATCACGCCGGCTTCCGTTTCGCGGTATTCCCCCGCTGCGGCGGCCGCGAGCCGGCGCTGGACCGTTCCGACACGCTGACCTGGC  >  AM260479/560088‑560350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.