New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1088373	15 (0.550)	4 (0.160)	4/198	2.0	24.2%	coding (437/1389 nt)	h16_A0996	FAD/FMN‑containing dehydrogenase
	?	AM260479	= 1088441	11 (0.430)					coding (505/1389 nt)	h16_A0996	FAD/FMN‑containing dehydrogenase

TCGATCCCCACGCGCAACGCGGCTATGTGGAGCCCGGCGCCACGCTGCGCGATTTCGACCATGAGGCGCAGGCCTTCGGCCTCGCCACGCCACTGGGCATCAACTCCACCACCGGCGTGGCCGGGCTGACGCTCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/1088235‑1088373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcggTCACGACCTGTGCCGA  <  AM260479/1088441‑1088426                                                                                                                                                             TCGATCCCCACGCGCAACGCGGCTATGTGGAGCCCGGCGCCACGCTGCGCGATTTCGACCATGAGGCGCAGGCCTTCGGCCTCGCCACGCCACTGGGCATCCACTCCACCACCGGCGTGGCCGGGCTGACGCTC                       >  2:56234/1‑134                                                                         CCTTCGGCCTCGCCACGCCACTGGGCATCAACTCCACCACCGGCGTGGCCGGGCTGACGCTCGGCGGTCAC              <  1:815533/71‑1                                                                         CCTTCGGCCTCGCCACGCCACTGGGCATCAACTCCACCACCGGCGTGGCCGGGCTGACGCTCGGCGGTCAC              >  2:815533/1‑71                                                                                                              CACCGGCGTGGCCGGGCTGACGCTCGGCGGTCACGACCTGTGCCGA  <  1:680551/46‑1                                                                                                              CACCGGCGTGGCCGGGCTGACGCTCGGCGGTCACGACCTGTGCCGA  >  2:680551/1‑46                                                                                                                                                             TCGATCCCCACGCGCAACGCGGCTATGTGGAGCCCGGCGCCACGCTGCGCGATTTCGACCATGAGGCGCAGGCCTTCGGCCTCGCCACGCCACTGGGCATCAACTCCACCACCGGCGTGGCCGGGCTGACGCTCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/1088235‑1088373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcggTCACGACCTGTGCCGA  <  AM260479/1088441‑1088426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.