New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1088373	15 (0.550)	4 (0.160)	4/198	2.0	24.2%	coding (437/1389 nt)	h16_A0996	FAD/FMN‑containing dehydrogenase
	?	AM260479	= 1088441	11 (0.430)					coding (505/1389 nt)	h16_A0996	FAD/FMN‑containing dehydrogenase

GGCCGGGCTGACGCTCGGCGGCGGCTTCGGCTGGCTCAGCCGCAAGTTCGGTACCACCGTCGACAACCTGGTATCGGCACAGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAGCGCCGACGAGAACGCCGACCTGTTCTGGGCGCTGCGCGGCGGCGGCGGCAACTTCGGCGTGGTGACGATGTTCGAGTTCCGGCTGCACCCGGTCGGCCCC  >  AM260479/1088353‑1088569                                                                                         |                                                                                                                                 ggCCGGGCTGACGCTCGGCGGCGGCTTCGGCTGGCTCAGCCGCAAGTTCGGTACCACCGTCGACAACCTGGTATCGGCACAGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAGCGCCGACGAGAACGcc                                                                                      >  1:1080859/1‑133 (MQ=255)                    ggcggcTTCGGCTGGCTCAGCCGCAAGTTCGGTACCACCGTCGACAACCTGGTATCGGCACAGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAGCGCCGACGAGAACGCCGACCTGTTCTGGGCGCTgcg                                                                  >  1:255188/1‑134 (MQ=255)                                                             cGACAACCTGGTATCGGCACAGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAg                                                                                                      <  1:817095/57‑1 (MQ=255)                                                             cGACAACCTGGTATCGGCACAGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAg                                                                                                      >  2:817095/1‑57 (MQ=255)                                                                  aCCTGGTATCGGCACAGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAGCGCCGACGAGAACGCCGACCTGTTCTGGGCGCTGCGCGGCGGCGGCGGCAACTTCGGCGTGGTGACGATGTTCGAGTTCCgg                    >  1:542149/1‑134 (MQ=255)                                                                       gTATCGGCACAGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAGCGCCGACGAGAACGCCGACCTGTTCTGGGCGCTGCGCGGCGGCGGCGGCAACTTCGGCGTGGTGACGATGTTCGAGTTCCGGCTGCa               >  1:755127/1‑134 (MQ=255)                                                                          tCGGCACAGGTCGTGAccgccgagcgtcagcccggccacgccggtg                                                                                                    <  1:680551‑M2/46‑31 (MQ=255)                                                                          tCGGCACAGGTCGTGAccgccgagcgtcagcccggccacgccggtg                                                                                                    >  2:680551‑M2/1‑16 (MQ=255)                                                                            ggCACAGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAGCGCCGACGAGAACGCCGACCTGTTCTGGGCGCTGCGCGGCGGCGGCGGCAACTTCGGCGTGGTGACGATGTTCGAGTTCCGGCTGCACCCg           <  2:38912/133‑1 (MQ=255)                                                                              cacaGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAGCGCCGACGAGAACGCCGACCTGTTCTGGGCGCTGCGCGGCGGCGGCGGCAACTTCGGCGTGGTGACGATGTTCGAGTTCCGGCTGCACCCGGTc        >  2:113554/1‑134 (MQ=255)                                                                                caGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAGCGCCGACGAGAACGCCGACCTGTTCTGGGCGCTGCGCGGCGGCGGCGGCAACTTCGGCGTGGTGACGATGTTCGAGTTCCGGCTGCACCCGGTCgg      <  2:255188/134‑1 (MQ=255)                                                                                 aGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAGCGCCGACGAGAACGCCGACCTGTTCTGGGCGCTGCGCGGCGGCGGCGGCAACTTCGGCGTGGTGACGATGTTCGAGTTCCGGCTGCACCCGGTCGGc     >  1:1054421/1‑134 (MQ=255)                                                                                      gTGAccgccgagcgtcagcccggccacgccggtggtggagttgatgcccagtggcgtggcgaggccgaagg                                                               <  1:815533‑M2/71‑68 (MQ=255)                                                                                      gTGAccgccgagcgtcagcccggccacgccggtggtggagttgatgcccagtggcgtggcgaggccgaagg                                                               >  2:815533‑M2/1‑4 (MQ=255)                                                                                       tGACCGCCGACGGCAAGCTGGTGCGCGCCAGCGCCGACGAGAACGCCGACCTGTTCTGGGCGCTGCGCGGCGGCGGCGGCAACTTCGGCGTGGTGACGATGTTCGAGTTCCGGCTGCACCCGGTCGGcccc  >  2:820294/1‑131 (MQ=255)                                                                                         |                                                                                                                                 GGCCGGGCTGACGCTCGGCGGCGGCTTCGGCTGGCTCAGCCGCAAGTTCGGTACCACCGTCGACAACCTGGTATCGGCACAGGTCGTGACCGCCGACGGCAAGCTGGTGCGCGCCAGCGCCGACGAGAACGCCGACCTGTTCTGGGCGCTGCGCGGCGGCGGCGGCAACTTCGGCGTGGTGACGATGTTCGAGTTCCGGCTGCACCCGGTCGGCCCC  >  AM260479/1088353‑1088569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.