| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 1095348 = | 18 (0.660) | 4 (0.160) | 4/192 | 2.0 | 20.9% | coding (312/624 nt) | h16_A1001 | conserved hypothetical protein |
| ? | AM260479 | 1095391 = | 14 (0.570) | coding (355/624 nt) | h16_A1001 | conserved hypothetical protein | |||||
CCTGAAATACACCCGCAGGCTGGAGAACGTCACCGAAATGTCGCGCACCACGGTCTGCGGCGGCCAGTAGCCCGGGCCCCATGGGCCCCACGGACCCCAGGGCCCGTACGGGCGGTAGTAGCCAGGCCCCCAGTACGGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/1095489‑1095348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacgggcccTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGG > AM260479/1095391‑1095457 CCTGAAATACACCCGCAGGCTGGAGAACGTCACCGAAATGTCGCGCACCACGGTCTGCGGCGGCCAGTAGCCCGGGCCCCATGGGCCCCACGGACCCCAGGGCCCGTACGGGCGGTAGTAGCCAGGCCCCCAG > 1:476293/1‑133 ATACACCCGCAGGCTGGAGAACGTCACCGAAATGTCGCGCACCACGGTCTGCGGCGGCCAGTAGCCCGGGCCCCATGGGCCCCACGGACCCCAAGGCCCGTACGGGCGGTAGTAGCCAGGCCCCCAGTACGGGC > 1:864796/1‑134 CACCCGCAGGCTGGAGAACGTCACCGAAATGTCGCGCACCACGGTCTGCGGCGGCCAGTAGCCCGGGCCCCATGGGCCCCACGGACCCCAAGGCCCGTACGGGCGGTAGTAGCCAGGCCCCCAGTACGGGCCC < 2:864796/133‑1 CCCGTACGGGCGGTAGTAGCCAGGCCCCCAGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGG < 1:466675/107‑1 CCCGTACGGGCGGTAGTAGCCAGGCCCCCAGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGG > 2:466675/1‑107 GGCGGTAGTAGCCAGGCCCCCAGTACGGGCCCTGGGGTCCGT < 1:976725/42‑1 GGCGGTAGTAGCCAGGCCCCCAGTACGGGCCCTGGGGTCCGT > 2:976725/1‑42 TACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGG > 1:727506/1‑76 TACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGG < 2:727506/76‑1 CCTGAAATACACCCGCAGGCTGGAGAACGTCACCGAAATGTCGCGCACCACGGTCTGCGGCGGCCAGTAGCCCGGGCCCCATGGGCCCCACGGACCCCAGGGCCCGTACGGGCGGTAGTAGCCAGGCCCCCAGTACGGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/1095489‑1095348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacgggcccTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGG > AM260479/1095391‑1095457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |