New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	1095348 =	18 (0.660)	4 (0.160)	4/192	2.0	20.9%	coding (312/624 nt)	h16_A1001	conserved hypothetical protein
	?	AM260479	1095391 =	14 (0.570)					coding (355/624 nt)	h16_A1001	conserved hypothetical protein

CGCGTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGCCTGCGGGTGTATTTCAGGGATGCGGCCAGCG  >  AM260479/1095265‑1095502                                                                                                                               |                                                                                                                cgcgTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTcc                                                                                                          >  2:476293/1‑134 (MQ=255)       aGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTgggg                                                                                                    <  2:560011/134‑1 (MQ=255)                         gcgcCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCgtacgg                                                                                  <  2:150492/134‑6 (MQ=255)                            cccGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTg                                                                               >  1:184983/1‑134 (MQ=255)                                   tCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGccgccg                                                                        <  1:346945/134‑1 (MQ=255)                                                            cccGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCgg                                               <  1:199779/134‑1 (MQ=255)                                                             ccGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGt                                              >  1:741601/1‑134 (MQ=255)                                                                          aCGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTgggg                                                                                                             <  2:939701/58‑1 (MQ=255)                                                                          aCGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTgggg                                                                                                             >  1:939701/1‑58 (MQ=255)                                                                          aCGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGc                                 >  2:613115/1‑134 (MQ=255)                                                                                    GGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCTTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGCCTGCGGgtg                        <  2:864796‑M1/133‑1 (MQ=255)                                                                                      GCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCTTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGCCTGCGGGTGTAt                     >  1:864796‑M1/1‑134 (MQ=255)                                                                                       cccgtacgggcggtagtagccaggcccccagtacgggcccTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCgg                                               <  1:466675‑M2/67‑1 (MQ=255)                                                                                       cccgtacgggcggtagtagccaggcccccagtacgggcccTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCgg                                               >  2:466675‑M2/41‑107 (MQ=255)                                                                                             CTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGCCTGCGGGTGTATTTCAgg               >  1:476293‑M1/1‑133 (MQ=255)                                                                                               ggcggtagtagccaggcccccagtacgggcccTGGGGTCCGt                                                                                                        >  2:976725‑M2/33‑42 (MQ=255)                                                                                               ggcggtagtagccaggcccccagtacgggcccTGGGGTCCGt                                                                                                        <  1:976725‑M2/10‑1 (MQ=255)                                                                                                         ctactaCCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGCCTGCGGGTGTATTTCAGGGATGCGGCCAGCg  >  2:730101/1‑134 (MQ=255)                                                                                                         ctactaCCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGCCTGCGGGTGTATTTCAGGGATGCGGCCAGCg  <  1:690212/134‑1 (MQ=255)                                                                                                          tactacCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAg                                                                     >  2:604401/1‑66 (MQ=255)                                                                                                          tactacCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAg                                                                     <  1:604401/66‑1 (MQ=255)                                                                                                                      tacgggcccTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCgg                                               <  2:727506‑M2/67‑1 (MQ=255)                                                                                                                      tacgggcccTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCgg                                               >  1:727506‑M2/10‑76 (MQ=255)                                                                                                                               |                                                                                                                CGCGTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGCCTGCGGGTGTATTTCAGGGATGCGGCCAGCG  >  AM260479/1095265‑1095502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.