New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	1095348 =	18 (0.660)	4 (0.160)	4/192	2.0	20.9%	coding (312/624 nt)	h16_A1001	conserved hypothetical protein
	?	AM260479	1095391 =	14 (0.570)					coding (355/624 nt)	h16_A1001	conserved hypothetical protein

TCGGCTTCGAGCAGGTGCCGGCGAAACAGGCGCGCTATCGCGTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGCCTGCGGGTG  >  AM260479/1095227‑1095480                                                                                                                          |                                                                                                                                     tCGGCTTCGAGCAGGTGCCGGCGAAACAGGCGCGCTATCGCGTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTgg                                                                                                                          <  1:1085382/134‑1 (MQ=255) tCGGCTTCGAGCAGGTGCCGGCGAAACAGGCGCGCTATCGCGTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTgg                                                                                                                          <  1:863025/134‑1 (MQ=255)            cAGGTGCCGGCGAAACAGGCGCGCTATCGCGTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTgg                                                                                                                                      <  1:453023/111‑1 (MQ=255)            cAGGTGCCGGCGAAACAGGCGCGCTATCGCGTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTgg                                                                                                                                      >  2:453023/1‑111 (MQ=255)              ggTGCCGGCGAAACAGGCGCGCTATCGCGTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGctac                                                                                                              >  2:346945/1‑133 (MQ=255)                     gCGAAACAGGCGCGCTATCGCGTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGccc                                                                                                      <  2:152506/134‑1 (MQ=255)                                       cgcgTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTcc                                                                                    >  2:476293/1‑134 (MQ=255)                                             aGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTgggg                                                                              <  2:560011/134‑1 (MQ=255)                                                       ccgaaatgtcgcgcaccacggtctgcggcggccagtagcccgggccccatgggccccacggaccccaGGGCCCGTa                                                                                                                              <  2:727506‑M1/9‑1 (MQ=255)                                                       ccgaaatgtcgcgcaccacggtctgcggcggccagtagcccgggccccatgggccccacggaccccaGGGCCCGTa                                                                                                                              >  1:727506‑M1/68‑76 (MQ=255)                                                       ccgaaatgtcgcgcaccacggtctgcggcggccagtagcccgggccccatgggccccacggaccccaGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACggg                                                                                               <  1:466675‑M1/40‑1 (MQ=255)                                                       ccgaaatgtcgcgcaccacggtctgcggcggccagtagcccgggccccatgggccccacggaccccaGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACggg                                                                                               >  2:466675‑M1/68‑107 (MQ=255)                                                               gcgcCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCgtacgg                                                            <  2:150492/134‑6 (MQ=255)                                                                  cccGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGcct                                                                                                      <  2:757323/89‑2 (MQ=255)                                                                  cccGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGcct                                                                                                      >  1:757323/1‑88 (MQ=255)                                                                  cccGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTg                                                         >  1:184983/1‑134 (MQ=255)                                                                         tCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGccgccg                                                  <  1:346945/134‑1 (MQ=255)                                                                                                  cccGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCgg                         <  1:199779/134‑1 (MQ=255)                                                                                                   ccGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGt                        >  1:741601/1‑134 (MQ=255)                                                                                                                acggaccccaGGGCCCGTACTGGGGGCCTGGCTACTACCGcc                                                                                                       <  1:976725‑M1/32‑1 (MQ=255)                                                                                                                acggaccccaGGGCCCGTACTGGGGGCCTGGCTACTACCGcc                                                                                                       >  2:976725‑M1/11‑42 (MQ=255)                                                                                                                aCGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTgggg                                                                                       >  1:939701/1‑58 (MQ=255)                                                                                                                aCGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTgggg                                                                                       <  2:939701/58‑1 (MQ=255)                                                                                                                aCGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGc           >  2:613115/1‑134 (MQ=255)                                                                                                                          GGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCTTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGCCTGCGGgtg  <  2:864796‑M1/133‑1 (MQ=255)                                                                                                                          |                                                                                                                                     TCGGCTTCGAGCAGGTGCCGGCGAAACAGGCGCGCTATCGCGTCAGCATGGATTTCGATGCCGCGCCCGGCATCGTGCGCGTGGCCGAGACCGTCTACCCGGACCCGTGGTACGGCCCGTGGGGCCCGTACTGGGGGCCTGGCTACTACCGCCCGTACGGGCCCTGGGGTCCGTGGGGCCCATGGGGCCCGGGCTACTGGCCGCCGCAGACCGTGGTGCGCGACATTTCGGTGACGTTCTCCAGCCTGCGGGTG  >  AM260479/1095227‑1095480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.