New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2105186 =	17 (0.630)	4 (0.170)	4/186	1.9	25.1%	coding (1459/1497 nt)	mtlD	mannitol dehydrogenase
	?	AM260479	2105220 =	9 (0.380)					coding (1493/1497 nt)	mtlD	mannitol dehydrogenase

CGGCCAGGGCGCCGAACTGGCGGCGTGTCAGGGAGAAGGTCATGGTGATGTGTGCTCCTGTATTGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAATGCCGCCGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2105303‑2105186 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccgccgcgccAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCGCAGGCAGTCTCGCGCTCGCATTGCCGGTAC  >  AM260479/2105220‑2105333                                                                                                                                                                                                                                          CGGCCAGGGCGCCGAACTGGCGGCGTGTCAGGGAGAAGGTCATGGTGATGTGTGCTCCTGTATTGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAATGCCGCCGCGCCAATAAGGCGCCAGAT                                                                                                     <  2:51153/133‑1     CAGGGCGCCGAACTGGCGGCGTGTCAGGGAGAAGGTCATGGTGATGTGTGCTCCTGTATTGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAATGCCGCCGCGCCAATAAGGCGCCAGATCTTTC                                                                                                <  2:1053456/134‑1     CAGGGCGCCGAACTGGCGGCGTGTCAGGGAGAAGGTCATGGTGATGTGTGCTCCTGTATTGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAATGCCGCC                                                                                                                         <  1:976393/109‑1     CAGGGCGCCGAACTGGCGGCGTGTCAGGGAGAAGGTCATGGTGATGTGTGCTCCTGTATTGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAATGCCGCC                                                                                                                         >  2:976393/1‑109                                        TCATGGTGATGTGTGCTCCTGTATTGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAAT                                                                                                                               <  2:208044/68‑1                                        TCATGGTGATGTGTGCTACTGTATTGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAAT                                                                                                                               >  1:208044/1‑68                                                           TGTATTGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAAT                                                                                                                               <  1:408855/49‑1                                                           TGTATTGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAAT                                                                                                                               >  2:408855/1‑49                                                                TGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAATGCCGCCGC                                                                                                                       <  1:1007499/52‑1                                                                TGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAATGCCGCCGC                                                                                                                       >  2:1007499/1‑52                                                                                        GCGGCGGCATGGACAGCAATGCCGCCGCGCCAATAAGGCGC                                                                                                          <  1:276383/41‑1                                                                                        GCGGCGGCATGGACAGCAATGCCGCCGCGCCAATAAGGCGC                                                                                                          >  2:276383/1‑41                                                                                                                     CCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCGCAGGCAGTCTCGCGCTCGCATTGCCGGTAC  <  1:260245/116‑1                                                                                                                     CCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCGCAGGCAGTCTCGCGCTCGCATTGCCGGTAC  >  2:260245/1‑116                                                                                                                                                                                                                                          CGGCCAGGGCGCCGAACTGGCGGCGTGTCAGGGAGAAGGTCATGGTGATGTGTGCTCCTGTATTGAAAGATCTGGCGCCTTATTGGCGCGGCGGCATGGACAGCAATGCCGCCGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2105303‑2105186 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccgccgcgccAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCGCAGGCAGTCTCGCGCTCGCATTGCCGGTAC  >  AM260479/2105220‑2105333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.