New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2105186 =	17 (0.630)	4 (0.170)	4/186	1.9	25.1%	coding (1459/1497 nt)	mtlD	mannitol dehydrogenase
	?	AM260479	2105220 =	9 (0.380)					coding (1493/1497 nt)	mtlD	mannitol dehydrogenase

CAGCGCAGGCTGCGACGCCGATGCCGCGCGCCAGGCGCTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCG  >  AM260479/2105059‑2105303                                                                                                                                |                                                                                                                      cagcgcagGCTGCGACGCCGATGCCGCGCGCCAGGCGCTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACcgcggcgcgg                                                                                                                 <  1:16449/134‑1 (MQ=255)          cTGCGACGCCGATGCCGCGCGCCAGGCGCTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGc                                                                                                        >  1:842727/1‑134 (MQ=255)             cGACGCCGATGCCGCGCGCCAGGCGCTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGt                                                                                                     >  2:472542/1‑134 (MQ=255)              gtaccggcaatgcgagcgcgagactgcctgcggccagggcgccgaactggcggcgtgtcagggagaaggtcatggtgatgtgtgctcctgtattgaaagatctggcgccttattgg                                                                                                                      <  1:260245‑M1/2‑1 (MQ=255)              gtaccggcaatgcgagcgcgagactgcctgcggccagggcgccgaactggcggcgtgtcagggagaaggtcatggtgatgtgtgctcctgtattgaaagatctggcgccttattgg                                                                                                                      >  2:260245‑M1/115‑116 (MQ=255)                  ccGATGCCGCGCGCCAGGCGCTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATg                                                                                                >  2:730335/1‑134 (MQ=255)                               ccAGGCGCTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTACATGCCGCCGCGCCaa                                                                                    >  2:261590/1‑133 (MQ=255)                                      cTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGgcgc                                                                            <  1:730335/134‑1 (MQ=255)                                           ccATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGAt                                                                       <  2:842727/134‑1 (MQ=255)                                                   ccgTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAAt                                                               <  1:650660/134‑1 (MQ=255)                                                            gCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGca                                                      <  1:472542/134‑1 (MQ=255)                                                                    ccGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCAt                                                                                                           >  1:365533/1‑73 (MQ=255)                                                                    ccGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCAt                                                                                                           <  2:365533/73‑1 (MQ=255)                                                                      gTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTc                                                                  <  1:219126/112‑1 (MQ=255)                                                                      gTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTc                                                                  >  2:219126/1‑112 (MQ=255)                                                                               gcCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTtct                                   <  1:952951/134‑1 (MQ=255)                                                                               gcCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTtct                                   <  1:355638/134‑1 (MQ=255)                                                                                               cTTGCCGCTTACCTGGCGGCACTGGCAAACcgcggc                                                                                                                     <  1:656232/36‑1 (MQ=255)                                                                                               cTTGCCGCTTACCTGGCGGCACTGGCAAACcgcggc                                                                                                                     >  2:656232/1‑36 (MQ=255)                                                                                                            gaaagatctggcgccttattGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTg      <  2:1053456‑M1/114‑1 (MQ=255)                                                                                                                 atctggcgccttattGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCg  <  2:51153‑M1/118‑1 (MQ=255)                                                                                                                      gcgccttattGGCGCGGCGGCATTGCTGTCCATGCcgccgc                                                                                         >  2:276383‑M1/11‑41 (MQ=255)                                                                                                                      gcgccttattGGCGCGGCGGCATTGCTGTCCATGCcgccgc                                                                                         <  1:276383‑M1/31‑1 (MQ=255)                                                                                                                                |                                                                                                                      CAGCGCAGGCTGCGACGCCGATGCCGCGCGCCAGGCGCTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCG  >  AM260479/2105059‑2105303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.