New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2105186 =	17 (0.630)	4 (0.170)	4/186	1.9	25.1%	coding (1459/1497 nt)	mtlD	mannitol dehydrogenase
	?	AM260479	2105220 =	9 (0.380)					coding (1493/1497 nt)	mtlD	mannitol dehydrogenase

CCAGGCGCTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCGCAGGCAGTCTCGCGCTCGCATTGCCGGTACGCCACGGCCTTGCCCAGG  >  AM260479/2105089‑2105351                                                                                                                                    |                                                                                                                                    ccAGGCGCTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTACATGCCGCCGCGCCaa                                                                                                                                    >  2:261590/1‑133 (MQ=255)        cTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGgcgc                                                                                                                            <  1:730335/134‑1 (MQ=255)             ccATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGAt                                                                                                                       <  2:842727/134‑1 (MQ=255)              cggccagggcgccgaactggcggcgtgtcagggagaaggtcatggtgatgtgtgctcctgtattgaaagatctggcgccttattggcgcggcggcatggacagcaatgccgccgcgccAATAAGGCGCCAGAt                                                                                                                       <  2:51153‑M2/15‑1 (MQ=255)                  cagggcgccgaactggcggcgtgtcagggagaaggtcatggtgatgtgtgctcctgtattgaaagatctggcgccttattggcgcggcggcatggacagcaatgccgccgcgccAATAAGGCGCCAGATCTTTc                                                                                                                  <  2:1053456‑M2/20‑1 (MQ=255)                     ccgTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAAt                                                                                                               <  1:650660/134‑1 (MQ=255)                              gCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGca                                                                                                      <  1:472542/134‑1 (MQ=255)                                        gTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTc                                                                                                                  >  2:219126/1‑112 (MQ=255)                                        gTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTc                                                                                                                  <  1:219126/112‑1 (MQ=255)                                                 gcCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTtct                                                                                   <  1:355638/134‑1 (MQ=255)                                                 gcCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTtct                                                                                   <  1:952951/134‑1 (MQ=255)                                                                              gaaagatctggcgccttattGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTg                                                      <  2:1053456‑M1/114‑1 (MQ=255)                                                                                   atctggcgccttattGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCg                                                  <  2:51153‑M1/118‑1 (MQ=255)                                                                                                     gcggcggcatggacagcaatgccgccgcgccAATAAGgcgc                                                                                                                            <  1:276383‑M2/10‑1 (MQ=255)                                                                                                     gcggcggcatggacagcaatgccgccgcgccAATAAGgcgc                                                                                                                            >  2:276383‑M2/32‑41 (MQ=255)                                                                                                     GCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCa                                                                                                                 >  2:1007499‑M1/1‑52 (MQ=255)                                                                                                     GCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCa                                                                                                                 <  1:1007499‑M1/52‑1 (MQ=255)                                                                                                       GGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTg                                                      >  2:976393‑M1/1‑109 (MQ=255)                                                                                                       GGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTg                                                      <  1:976393‑M1/109‑1 (MQ=255)                                                                                                             ATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACa                                                                                                            >  2:408855‑M1/1‑49 (MQ=255)                                                                                                             ATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACa                                                                                                            <  1:408855‑M1/49‑1 (MQ=255)                                                                                                             ATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGTAGCACACATCACCATGa                                                                                         >  1:208044‑M1/1‑68 (MQ=255)                                                                                                             ATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGa                                                                                         <  2:208044‑M1/68‑1 (MQ=255)                                                                                                                                  ccAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGgcaaggccgtggcgtaccggcaatgcgagcgcgagactgcctgcggccagg  >  2:1068801‑M1/1‑83 (MQ=255)                                                                                                                                  ccAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCGCAGGCAGTCTCGCGCTCGCATTGCCGGTAc                    >  2:260245‑M2/3‑116 (MQ=255)                                                                                                                                  ccAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCGCAGGCAGTCTCGCGCTCGCATTGCCGGTAc                    <  1:260245‑M2/114‑1 (MQ=255)                                                                                                                                    |                                                                                                                                    CCAGGCGCTCGGCCATGCCGCCGTCTTTGGCACCACGCCGTGGCCCGCGCCCCTTGCCGCCCGCCTTGCCGCTTACCTGGCGGCACTGGCAAACCGCGGCGCGGCGGCATTGCTGTCCATGCCGCCGCGCCAATAAGGCGCCAGATCTTTCAATACAGGAGCACACATCACCATGACCTTCTCCCTGACACGCCGCCAGTTCGGCGCCCTGGCCGCAGGCAGTCTCGCGCTCGCATTGCCGGTACGCCACGGCCTTGCCCAGG  >  AM260479/2105089‑2105351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.