New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2193765	14 (0.520)	6 (0.240)	3/196	2.3	26.1%	coding (502/831 nt)	h16_A2021	universal stress protein, UspA family
	?	AM260479	= 2193810	21 (0.840)					coding (457/831 nt)	h16_A2021	universal stress protein, UspA family

CTGGCCAGCCACGCTGTCAGCCGGTTCCCGCTGTCACGGCAGGTCTCTTCGTCAATGGCAGCCGCGCTGACCACCAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2193632‑2193765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgcTTTGGTGGTCATGTCGCGATCGCATGGAACGGCGGTCGAGAGGCCGCGCGGGCAGTAGCGGACGCATTGCCGTGGCTCGCGCATGCCAGTGCTGTTACCGCCCTGGTGGT  <  AM260479/2193810‑2193701                                                                                                                                                                                                                                                      CTGGCCAGCCACGCTGTCAGCCGGTTCCCGCTGTCACGGCAGGTCTCTTCGTCAATGGCAGCCGCGCTGACCACCAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGC                                                                                                                >  2:1090909/1‑134                                                                                                            CGGCAATGCGTCCGCTACTGCCCGCGCTTTGGTGGTCATGTCGCGATCGCATGGAACGGCGGTCGAGAGGCCGCGCGGGCAGTAGCGGACGCATTGCCGTGGCTCGCGCATGCCAGTGCTGTTACCGCCCTGGT     >  2:543691/1‑134                                                                                                            CGGCAATGCGTCCGCTACTGCCCGCGCTTTGGTGGTCATGTCGCGATCGCATGGAACGGCGGTCGAGAGGCC                                                                   >  1:21210/1‑72                                                                                                            CGGCAATGCGTCCGCTACTGCCCGCGCTTTGGTGGTCATGTCGCGATCGCATGGAACGGCGGTCGAGAGGCC                                                                   >  1:751480/1‑72                                                                                                            CGGCAATGCGTCCGCTACTGCCCGCGCTTTGGTGGTCATGTCGCGATCGCATGGAACGGCGGTCGAGAGGCC                                                                   <  2:21210/72‑1                                                                                                            CGGCAATGCGTCCGCTACTGCCCGCGCTTTGGTGGTCATGTCGCGATCGCATGGAACGGCGGTCGAGAGGCC                                                                   <  2:751480/72‑1                                                                                                                 ATGCGTCCGCTACTGCCCGCGCTTTGGTGGTCATGTCGCGATCGCATGGAACGGCGGTCGAGAGGCCGCGCGGGCAGTAGCGGACGCATTGCCGTGGCTCGCGCATGCCAGTGCTGTTACCGCCCTGGTGGT  >  1:1090909/1‑132                                                                                                                                                                                                                                                      CTGGCCAGCCACGCTGTCAGCCGGTTCCCGCTGTCACGGCAGGTCTCTTCGTCAATGGCAGCCGCGCTGACCACCAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2193632‑2193765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgcTTTGGTGGTCATGTCGCGATCGCATGGAACGGCGGTCGAGAGGCCGCGCGGGCAGTAGCGGACGCATTGCCGTGGCTCGCGCATGCCAGTGCTGTTACCGCCCTGGTGGT  <  AM260479/2193810‑2193701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.