| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 2193765 | 14 (0.520) | 6 (0.240) | 3/196 | 2.3 | 26.1% | coding (502/831 nt) | h16_A2021 | universal stress protein, UspA family |
| ? | AM260479 | = 2193810 | 21 (0.840) | coding (457/831 nt) | h16_A2021 | universal stress protein, UspA family | |||||
AGCCGCGCTGACCACCAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCCAGCAGCGCCGGCACATCGGCATCCGCCGACGGCGGTGC > AM260479/2193691‑2193924 | aGCCGCGCTGACCACCAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGgccggccg < 2:1073637/134‑1 (MQ=255) accaccAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAgcgcgggcagtagcggacgcat > 1:1090909‑M2/1‑110 (MQ=255) accaGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAgcgcgggcagtagcggacgcattgccg > 2:543691‑M2/1‑107 (MQ=255) cAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCgcgct < 1:182840/112‑2 (MQ=255) cAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCgcgct > 2:182840/1‑111 (MQ=255) gCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCa < 2:63536/132‑1 (MQ=255) gCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCAtt < 1:874329/134‑1 (MQ=255) tCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGa < 1:777893/94‑1 (MQ=255) tCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGa > 2:777893/1‑94 (MQ=255) tCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTcc > 1:842929/1‑104 (MQ=255) tCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTcc < 2:842929/104‑1 (MQ=255) tACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCAtt > 1:627834/1‑105 (MQ=255) tACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCAtt < 2:627834/105‑1 (MQ=255) cTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCcag > 2:95029/1‑133 (MQ=255) cgcgcgGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCCAGCAgcgc < 2:28936/134‑1 (MQ=255) ggCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAgcgcgggcagtagcggacgcattgccg > 1:751480‑M2/1‑45 (MQ=255) ggCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAgcgcgggcagtagcggacgcattgccg < 2:751480‑M2/72‑28 (MQ=255) ggCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAgcgcgggcagtagcggacgcattgccg > 1:21210‑M2/1‑45 (MQ=255) ggCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAgcgcgggcagtagcggacgcattgccg < 2:21210‑M2/72‑28 (MQ=255) aTGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCCAGCAGCGCCGGCACATCGGCATCCGCCGAcggc > 2:920630/1‑134 (MQ=255) aTCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCCAGCAGCGCCGGCACATCGGCATCCGCCGACGGCGGTGc < 1:95029/134‑1 (MQ=255) gACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATggg < 2:394137/51‑1 (MQ=255) gACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATggg > 1:394137/1‑51 (MQ=255) gACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCCAGCAGCGCCGGCACATCGGCATccgccg < 2:850544/119‑1 (MQ=255) gACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCCAGCAGCGCCGGCACATCGGCATccgccg > 1:850544/1‑119 (MQ=255) gACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGc < 2:62650/85‑1 (MQ=255) gACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGc > 1:62650/1‑85 (MQ=255) | AGCCGCGCTGACCACCAGGGCGGTAACAGCACTGGCATGCGCGAGCCACGGCAATGCGTCCGCTACTGCCCGCGCGGCCTCTCGACCGCCGTTCCATGCGATCGCGACATGACCACCAAAGCGCGGGCCGGCCGCGCCCGGCACCAGCAGGATGGGCCGTCCGGCATTGAGCATCGCATACTCCGCAACCCCGGCCAGCAGCGCCGGCACATCGGCATCCGCCGACGGCGGTGC > AM260479/2193691‑2193924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |